Literature DB >> 15345538

Effects of receptor interaction in bacterial chemotaxis.

Bernardo A Mello1, Leah Shaw, Yuhai Tu.   

Abstract

Signaling in bacterial chemotaxis is mediated by several types of transmembrane chemoreceptors. The chemoreceptors form tight polar clusters whose functions are of great biological interest. Here, we study the general properties of a chemotaxis model that includes interaction between neighboring chemoreceptors within a receptor cluster and the appropriate receptor methylation and demethylation dynamics to maintain (near) perfect adaptation. We find that, depending on the receptor coupling strength, there are two steady-state phases in the model: a stationary phase and an oscillatory phase. The mechanism for the existence of the two phases is understood analytically. Two important phenomena in transient response, the overshoot in response to a pulse stimulus and the high gain in response to sustained changes in external ligand concentrations, can be explained in our model, and the mechanisms for these two seemingly different phenomena are found to be closely related. The model also naturally accounts for several key in vitro response experiments and the recent in vivo fluorescence resonance energy transfer experiments for various mutant strains. Quantitatively, our study reveals possible choices of parameters for fitting the existing experiments and suggests future experiments to test the model predictions.

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Year:  2004        PMID: 15345538      PMCID: PMC1304564          DOI: 10.1529/biophysj.104.042739

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

Review 1.  Transmembrane signaling in bacterial chemoreceptors.

Authors:  J J Falke; G L Hazelbauer
Journal:  Trends Biochem Sci       Date:  2001-04       Impact factor: 13.807

2.  Receptor sensitivity in bacterial chemotaxis.

Authors:  Victor Sourjik; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

3.  Receptor methylation controls the magnitude of stimulus-response coupling in bacterial chemotaxis.

Authors:  Mikhail N Levit; Jeffry B Stock
Journal:  J Biol Chem       Date:  2002-07-15       Impact factor: 5.157

4.  Robustness in bacterial chemotaxis.

Authors:  U Alon; M G Surette; N Barkai; S Leibler
Journal:  Nature       Date:  1999-01-14       Impact factor: 49.962

5.  Robustness in simple biochemical networks.

Authors:  N Barkai; S Leibler
Journal:  Nature       Date:  1997-06-26       Impact factor: 49.962

6.  Transient response to chemotactic stimuli in Escherichia coli.

Authors:  H C Berg; P M Tedesco
Journal:  Proc Natl Acad Sci U S A       Date:  1975-08       Impact factor: 11.205

7.  Polar location of the chemoreceptor complex in the Escherichia coli cell.

Authors:  J R Maddock; L Shapiro
Journal:  Science       Date:  1993-03-19       Impact factor: 47.728

8.  Attenuation of sensory receptor signaling by covalent modification.

Authors:  K A Borkovich; L A Alex; M I Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1992-08-01       Impact factor: 11.205

9.  Chemotactic signal integration in bacteria.

Authors:  S Khan; J L Spudich; J A McCray; D R Trentham
Journal:  Proc Natl Acad Sci U S A       Date:  1995-10-10       Impact factor: 11.205

10.  Quantitative modeling of sensitivity in bacterial chemotaxis: the role of coupling among different chemoreceptor species.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-25       Impact factor: 12.779

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  28 in total

1.  A dynamic-signaling-team model for chemotaxis receptors in Escherichia coli.

Authors:  Clinton H Hansen; Victor Sourjik; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-20       Impact factor: 11.205

2.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

3.  An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

4.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

5.  Physical responses of bacterial chemoreceptors.

Authors:  Ady Vaknin; Howard C Berg
Journal:  J Mol Biol       Date:  2006-12-15       Impact factor: 5.469

6.  Precise adaptation in bacterial chemotaxis through "assistance neighborhoods".

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

7.  Effects of adaptation in maintaining high sensitivity over a wide range of backgrounds for Escherichia coli chemotaxis.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

8.  Precision sensing by two opposing gradient sensors: how does Escherichia coli find its preferred pH level?

Authors:  Bo Hu; Yuhai Tu
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

Review 9.  Information processing in bacteria: memory, computation, and statistical physics: a key issues review.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  Rep Prog Phys       Date:  2016-04-08

Review 10.  Quantitative modeling of bacterial chemotaxis: signal amplification and accurate adaptation.

Authors:  Yuhai Tu
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

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