Literature DB >> 15345467

Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments.

Gordon Webster1, R John Parkes, John C Fry, Andrew J Weightman.   

Abstract

Phylogenetic analysis of 16S rRNA gene sequences from deep marine sediments identified a deeply branching clade, designated candidate division JS1. Primers for PCR amplification of partial 16S rRNA genes that target the JS1 division were developed and used to detect JS1 sequences in DNA extracted from various sedimentary environments, including, for the first time, coastal marine and brackish sediments.

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Year:  2004        PMID： 15345467      PMCID： PMC520855          DOI： 10.1128/AEM.70.9.5708-5713.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  31 in total

1.  Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis.

Authors: 
Journal:  FEMS Microbiol Ecol       Date:  2001-01       Impact factor: 4.194

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3.  Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria.

Authors:  M A Dojka; J K Harris; N R Pace
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

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Authors:  F Inagaki; K Takai; T Komatsu; T Kanamatsu; K Fujioka; K Horikoshi
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5.  Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale.

Authors:  Gordon Webster; Carole J Newberry; John C Fry; Andrew J Weightman
Journal:  J Microbiol Methods       Date:  2003-10       Impact factor: 2.363

6.  Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176).

Authors:  Konstantinos Ar Kormas; David C Smith; Virginia Edgcomb; Andreas Teske
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Review 7.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

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8.  Bacteria and Archaea physically associated with Gulf of Mexico gas hydrates.

Authors:  B D Lanoil; R Sassen; M T La Duc; S T Sweet; K H Nealson
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

9.  Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin.

Authors:  David W Reed; Yoshiko Fujita; Mark E Delwiche; D Brad Blackwelder; Peter P Sheridan; Takashi Uchida; Frederick S Colwell
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

Review 10.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205
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  30 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

2.  Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment.

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3.  Bacterial diversity in surface sediments from the Pacific Arctic Ocean.

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5.  Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

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6.  Tracking microbial habitats in subseafloor sediments.

Authors:  Andreas P Teske
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7.  Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.

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8.  Influence of DNA extraction method, 16S rRNA targeted hypervariable regions, and sample origin on microbial diversity detected by 454 pyrosequencing in marine chemosynthetic ecosystems.

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9.  Microbial community composition and diversity in Caspian Sea sediments.

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10.  Two distinct Photobacterium populations thrive in ancient Mediterranean sapropels.

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