Literature DB >> 19719622

Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176).

Konstantinos Ar Kormas1, David C Smith, Virginia Edgcomb, Andreas Teske.   

Abstract

Abstract The prokaryotic community inhabiting the deep subsurface sediments in the Forearc Basin of the Nankai Trough southeast of Japan (ODP Site 1176) was analyzed by 16S rDNA sequencing. Sediment samples from 1.15, 51.05, 98.50 and 193.96 m below sea floor (mbsf) harbored highly diverse bacterial communities. The most frequently retrieved clones included members of the Green non-sulfur bacteria whose closest relatives come from deep subsurface environments, a new epsilon-proteobacterial phylotype, and representatives of a cluster of closely related bacterial sequences from hydrocarbon- and methane-rich sediments around the world. Archaeal clones were limited to members of the genus Thermococcus, and were only obtained from the two deepest samples.

Entities:  

Year:  2003        PMID： 19719622     DOI： 10.1016/S0168-6496(03)00128-4

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN： 0168-6496            Impact factor:   4.194


  26 in total

1.  Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments.

Authors:  Gordon Webster; R John Parkes; John C Fry; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

2.  Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents.

Authors:  Barbara J Campbell; S Craig Cary
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

3.  Survival and growth of two heterotrophic hydrothermal vent archaea, Pyrococcus strain GB-D and Thermococcus fumicolans, under low pH and high sulfide concentrations in combination with high temperature and pressure regimes.

Authors:  Virginia P Edgcomb; Stephen J Molyneaux; Simone Böer; Carl O Wirsen; Mak Saito; Michael S Atkins; Karen Lloyd; Andreas Teske
Journal:  Extremophiles       Date:  2006-11-17       Impact factor: 2.395

4.  Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Authors:  Fumio Inagaki; Takuro Nunoura; Satoshi Nakagawa; Andreas Teske; Mark Lever; Antje Lauer; Masae Suzuki; Ken Takai; Mark Delwiche; Frederick S Colwell; Kenneth H Nealson; Koki Horikoshi; Steven D'Hondt; Bo B Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

5.  Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula.

Authors:  Tohru Kobayashi; Osamu Koide; Kozue Mori; Shigeru Shimamura; Takae Matsuura; Takeshi Miura; Yoshihiro Takaki; Yuki Morono; Takuro Nunoura; Hiroyuki Imachi; Fumio Inagaki; Ken Takai; Koki Horikoshi
Journal:  Extremophiles       Date:  2008-03-27       Impact factor: 2.395

Review 6.  Microbial ecology of the dark ocean above, at, and below the seafloor.

Authors:  Beth N Orcutt; Jason B Sylvan; Nina J Knab; Katrina J Edwards
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

7.  Biogeography and biodiversity in sulfide structures of active and inactive vents at deep-sea hydrothermal fields of the Southern Mariana Trough.

Authors:  Shingo Kato; Yoshinori Takano; Takeshi Kakegawa; Hironori Oba; Kazuhiko Inoue; Chiyori Kobayashi; Motoo Utsumi; Katsumi Marumo; Kensei Kobayashi; Yuki Ito; Jun-ichiro Ishibashi; Akihiko Yamagishi
Journal:  Appl Environ Microbiol       Date:  2010-03-12       Impact factor: 4.792

8.  Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge.

Authors:  Steffen Leth Jorgensen; Bjarte Hannisdal; Anders Lanzén; Tamara Baumberger; Kristin Flesland; Rita Fonseca; Lise Ovreås; Ida H Steen; Ingunn H Thorseth; Rolf B Pedersen; Christa Schleper
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

9.  Two distinct Photobacterium populations thrive in ancient Mediterranean sapropels.

Authors:  Jacqueline Süss; Kerstin Herrmann; Michael Seidel; Heribert Cypionka; Bert Engelen; Henrik Sass
Journal:  Microb Ecol       Date:  2007-09-16       Impact factor: 4.552

10.  Estimates of biogenic methane production rates in deep marine sediments at Hydrate Ridge, Cascadia margin.

Authors:  F S Colwell; S Boyd; M E Delwiche; D W Reed; T J Phelps; D T Newby
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792
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