Literature DB >> 15333698

Enzymatic switching for efficient and accurate translesion DNA replication.

Scott D McCulloch1, Robert J Kokoska, Olga Chilkova, Carrie M Welch, Erik Johansson, Peter M J Burgers, Thomas A Kunkel.   

Abstract

When cyclobutane pyrimidine dimers stall DNA replication by DNA polymerase (Pol) delta or epsilon, a switch occurs to allow translesion synthesis by DNA polymerase eta, followed by another switch that allows normal replication to resume. In the present study, we investigate these switches using Saccharomyces cerevisiae Pol delta, Pol epsilon and Pol eta and a series of matched and mismatched primer templates that mimic each incorporation needed to completely bypass a cis-syn thymine-thymine (TT) dimer. We report a complementary pattern of substrate use indicating that enzymatic switching involving localized translesion synthesis by Pol eta and mismatch excision and polymerization by a major replicative polymerase can account for the efficient and accurate dimer bypass known to suppress sunlight-induced mutagenesis and skin cancer.

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Year:  2004        PMID: 15333698      PMCID: PMC516052          DOI: 10.1093/nar/gkh777

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  44 in total

Review 1.  Functions of eukaryotic DNA polymerases.

Authors:  Polina V Shcherbakova; Katarzyna Bebenek; Thomas A Kunkel
Journal:  Sci Aging Knowledge Environ       Date:  2003-02-26

2.  hRAD30 mutations in the variant form of xeroderma pigmentosum.

Authors:  R E Johnson; C M Kondratick; S Prakash; L Prakash
Journal:  Science       Date:  1999-07-09       Impact factor: 47.728

3.  Requirement of DNA polymerase activity of yeast Rad30 protein for its biological function.

Authors:  R E Johnson; S Prakash; L Prakash
Journal:  J Biol Chem       Date:  1999-06-04       Impact factor: 5.157

4.  The Pol32 subunit of DNA polymerase delta contains separable domains for processive replication and proliferating cell nuclear antigen (PCNA) binding.

Authors:  Erik Johansson; Parie Garg; Peter M J Burgers
Journal:  J Biol Chem       Date:  2003-10-31       Impact factor: 5.157

5.  Mouse Rev1 protein interacts with multiple DNA polymerases involved in translesion DNA synthesis.

Authors:  Caixia Guo; Paula L Fischhaber; Margaret J Luk-Paszyc; Yuji Masuda; Jing Zhou; Kenji Kamiya; Caroline Kisker; Errol C Friedberg
Journal:  EMBO J       Date:  2003-12-15       Impact factor: 11.598

6.  Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase, Poleta.

Authors:  R E Johnson; S Prakash; L Prakash
Journal:  Science       Date:  1999-02-12       Impact factor: 47.728

7.  Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation.

Authors:  Philipp Stelter; Helle D Ulrich
Journal:  Nature       Date:  2003-09-11       Impact factor: 49.962

8.  The mechanism of nucleotide incorporation by human DNA polymerase eta differs from that of the yeast enzyme.

Authors:  M Todd Washington; Robert E Johnson; Louise Prakash; Satya Prakash
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

9.  The efficiency and specificity of apurinic/apyrimidinic site bypass by human DNA polymerase eta and Sulfolobus solfataricus Dpo4.

Authors:  Robert J Kokoska; Scott D McCulloch; Thomas A Kunkel
Journal:  J Biol Chem       Date:  2003-09-30       Impact factor: 5.157

10.  Replication of a cis-syn thymine dimer at atomic resolution.

Authors:  Hong Ling; François Boudsocq; Brian S Plosky; Roger Woodgate; Wei Yang
Journal:  Nature       Date:  2003-08-06       Impact factor: 49.962

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  46 in total

1.  The use of modified and non-natural nucleotides provide unique insights into pro-mutagenic replication catalyzed by polymerase eta.

Authors:  Jung-Suk Choi; Anvesh Dasari; Peter Hu; Stephen J Benkovic; Anthony J Berdis
Journal:  Nucleic Acids Res       Date:  2015-12-29       Impact factor: 16.971

2.  Controlling the subcellular localization of DNA polymerases iota and eta via interactions with ubiquitin.

Authors:  Brian S Plosky; Antonio E Vidal; Antonio R Fernández de Henestrosa; Mary P McLenigan; John P McDonald; Samantha Mead; Roger Woodgate
Journal:  EMBO J       Date:  2006-06-08       Impact factor: 11.598

3.  Evidence for extrinsic exonucleolytic proofreading.

Authors:  Stephanie A Nick McElhinny; Youri I Pavlov; Thomas A Kunkel
Journal:  Cell Cycle       Date:  2006-05-01       Impact factor: 4.534

Review 4.  Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance.

Authors:  Lauren S Waters; Brenda K Minesinger; Mary Ellen Wiltrout; Sanjay D'Souza; Rachel V Woodruff; Graham C Walker
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 5.  DNA polymerase epsilon: a polymerase of unusual size (and complexity).

Authors:  Zachary F Pursell; Thomas A Kunkel
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2008

6.  Evidence for the kinetic partitioning of polymerase activity on G-quadruplex DNA.

Authors:  Sarah Eddy; Leena Maddukuri; Amit Ketkar; Maroof K Zafar; Erin E Henninger; Zachary F Pursell; Robert L Eoff
Journal:  Biochemistry       Date:  2015-05-11       Impact factor: 3.162

7.  Translesion synthesis of abasic sites by yeast DNA polymerase epsilon.

Authors:  Nasim Sabouri; Erik Johansson
Journal:  J Biol Chem       Date:  2009-09-23       Impact factor: 5.157

8.  Human Translesion Polymerase κ Exhibits Enhanced Activity and Reduced Fidelity Two Nucleotides from G-Quadruplex DNA.

Authors:  Sarah Eddy; Magdalena Tillman; Leena Maddukuri; Amit Ketkar; Maroof K Zafar; Robert L Eoff
Journal:  Biochemistry       Date:  2016-09-07       Impact factor: 3.162

9.  Biochemical analysis of active site mutations of human polymerase η.

Authors:  Samuel C Suarez; Renee A Beardslee; Shannon M Toffton; Scott D McCulloch
Journal:  Mutat Res       Date:  2013-03-13       Impact factor: 2.433

10.  Kinetic analysis of correct nucleotide insertion by a Y-family DNA polymerase reveals conformational changes both prior to and following phosphodiester bond formation as detected by tryptophan fluorescence.

Authors:  Jeff W Beckman; Qixin Wang; F Peter Guengerich
Journal:  J Biol Chem       Date:  2008-11-04       Impact factor: 5.157

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