Literature DB >> 15331775

A second-generation system for unbiased reading frame selection.

Monica L Gerth1, Wayne M Patrick, Stefan Lutz.   

Abstract

Reading frame selection of nucleic acids has important implications for protein engineering and genomics. Current methods are limited because selection of the gene of interest inevitably depends on the solubility of its translated product. Here we report the construction of the pInSALect vector, which provides strict reading frame selection without concomitant selection for protein solubility or folding. This plasmid incorporates the cis-splicing VMA intein sequence from Saccharomyces cerevisiae to facilitate the post-translational self-excision of the protein of interest, thereby eliminating potential aggregation problems. Results from two libraries of chimeric glycinamide ribonucleotide formyltransferases confirm the superior performance of pInSALect over existing reading frame selection systems.

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Year:  2004        PMID: 15331775     DOI: 10.1093/protein/gzh068

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  14 in total

1.  A method for multi-codon scanning mutagenesis of proteins based on asymmetric transposons.

Authors:  Jia Liu; T Ashton Cropp
Journal:  Protein Eng Des Sel       Date:  2011-12-18       Impact factor: 1.650

2.  Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.

Authors:  Benjamin D Allen; Alex Nisthal; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

3.  Experimental methods for scanning unnatural amino acid mutagenesis.

Authors:  Jia Liu; T Ashton Cropp
Journal:  Methods Mol Biol       Date:  2012

4.  Non-homologous recombination of deoxyribonucleoside kinases from human and Drosophila melanogaster yields human-like enzymes with novel activities.

Authors:  Monica L Gerth; Stefan Lutz
Journal:  J Mol Biol       Date:  2007-05-22       Impact factor: 5.469

5.  SwiftLib: rapid degenerate-codon-library optimization through dynamic programming.

Authors:  Timothy M Jacobs; Hayretin Yumerefendi; Brian Kuhlman; Andrew Leaver-Fay
Journal:  Nucleic Acids Res       Date:  2014-12-24       Impact factor: 16.971

6.  Genetic selection for protein solubility enabled by the folding quality control feature of the twin-arginine translocation pathway.

Authors:  Adam C Fisher; Woojin Kim; Matthew P DeLisa
Journal:  Protein Sci       Date:  2006-02-01       Impact factor: 6.725

7.  Mutagenesis of non-conserved active site residues improves the activity and narrows the specificity of human thymidine kinase 2.

Authors:  Monica L Gerth; Stefan Lutz
Journal:  Biochem Biophys Res Commun       Date:  2007-01-23       Impact factor: 3.575

8.  Rational protein sequence diversification by multi-codon scanning mutagenesis.

Authors:  Jia Liu; T Ashton Cropp
Journal:  Methods Mol Biol       Date:  2013

Review 9.  Library methods for structural biology of challenging proteins and their complexes.

Authors:  Darren J Hart; Geoffrey S Waldo
Journal:  Curr Opin Struct Biol       Date:  2013-04-17       Impact factor: 6.809

10.  A general method for scanning unnatural amino acid mutagenesis.

Authors:  Kelly A Daggett; Mark Layer; T Ashton Cropp
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

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