Literature DB >> 8901522

Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme.

D M Rothwarf1, H A Scheraga.   

Abstract

The folding kinetics have been determined for hen egg white lysozyme and two mutants in which Trp-62 and Trp-108 have been individually replaced by tyrosine (Tyr-62-lysozyme and Tyr-108-lysozyme, respectively). An earlier study of wild-type lysozyme [Denton, M. E., Rothwarf, D. M., & Scheraga, H. A. (1994) Biochemistry 33, 11225-11236] had indicated that two transient intermediates were formed during the early stages of refolding. Both intermediates were characterized by substantial quenching of tryptophan fluorescence which suggested that, during the refolding process, Trp-62 and/or Trp-108 was involved in a non-native tertiary interaction(s). Both Tyr-108- and Tyr-62-lysozyme fold significantly faster than wild-type lysozyme (7- and 13-fold, respectively). These results indicate that the rate-limiting step in the folding of lysozyme arises not from any inherent slowness in the formation of the native structure but rather as a consequence of the formation of a highly stable intermediate which contains significant non-native structure which must be disrupted prior to, or in concert with, subsequent folding. The data suggest that aromatic and hydrophobic interactions play a pivotal role in the formation of the non-native intermediate. The general role that non-native interactions play in the folding process is discussed.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8901522     DOI: 10.1021/bi9608119

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  Point mutations and sequence variability in proteins: redistributions of preexisting populations.

Authors:  N Sinha; R Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

2.  A near-native state on the slow refolding pathway of hen lysozyme.

Authors:  S K Kulkarni; A E Ashcroft; M Carey; D Masselos; C V Robinson; S E Radford
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

3.  A non-native alpha-helix is formed in the beta-sheet region of the molten globule state of canine milk lysozyme.

Authors:  Masahiro Watanabe; Yoshihiro Kobashigawa; Tomoyasu Aizawa; Makoto Demura; Katsutoshi Nitta
Journal:  Protein J       Date:  2004-07       Impact factor: 2.371

4.  Kinetics of surfactant-induced aggregation of lysozyme studied by fluorescence spectroscopy.

Authors:  Neha Jain; Mily Bhattacharya; Samrat Mukhopadhyay
Journal:  J Fluoresc       Date:  2010-10-16       Impact factor: 2.217

5.  A tightly packed hydrophobic cluster directs the formation of an off-pathway sub-millisecond folding intermediate in the alpha subunit of tryptophan synthase, a TIM barrel protein.

Authors:  Ying Wu; Ramakrishna Vadrevu; Sagar Kathuria; Xiaoyan Yang; C Robert Matthews
Journal:  J Mol Biol       Date:  2006-12-15       Impact factor: 5.469

6.  A unified mechanism for protein folding: predetermined pathways with optional errors.

Authors:  Mallela M G Krishna; S Walter Englander
Journal:  Protein Sci       Date:  2007-03       Impact factor: 6.725

7.  Characterization of protein-folding pathways by reduced-space modeling.

Authors:  Sebastian Kmiecik; Andrzej Kolinski
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-16       Impact factor: 11.205

8.  Exploiting the downhill folding regime via experiment.

Authors:  Victor Muñoz; Mourad Sadqi; Athi N Naganathan; David de Sancho
Journal:  HFSP J       Date:  2008-10-13

9.  Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics.

Authors:  Oyvind Halskau; Raul Perez-Jimenez; Beatriz Ibarra-Molero; Jarl Underhaug; Victor Muñoz; Aurora Martinez; Jose M Sanchez-Ruiz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-11       Impact factor: 11.205

10.  Dissecting key residues in folding and stability of the bacterial immunity protein 7.

Authors:  Stuart Knowling; Alice I Bartlett; Sheena E Radford
Journal:  Protein Eng Des Sel       Date:  2011-03-10       Impact factor: 1.650

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.