Literature DB >> 15325647

Growth and disorder of macromolecular crystals: insights from atomic force microscopy and X-ray diffraction studies.

Alexander J Malkin1, Robert E Thorne.   

Abstract

The growth processes and defect structures of protein and virus crystals have been studied in situ by atomic force microscopy (AFM), X-ray diffraction topography, and high-resolution reciprocal space scanning. Molecular mechanisms of macromolecular crystallization were visualized and fundamental kinetic and thermodynamic parameters, which govern the crystallization process of a number of macromolecular crystals, have been determined. High-resolution AFM imaging of crystal surfaces provides information on the packing of macromolecules within the unit cell and on the structure of large macromolecular assemblies. X-ray diffraction techniques provide a bulk probe with poorer spatial resolution but excellent sensitivity to mosaicity and strain. Defect structures and disorder created in macromolecular crystals during growth, seeding, and post-growth treatments including flash cooling were characterized and their impacts on the diffraction properties of macromolecular crystals have been analyzed. The diverse and dramatic effects of impurities on growth and defect formation have also been studied. Practical implications of these fundamental insights into the improvement of macromolecular crystallization protocols are discussed.

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Year:  2004        PMID: 15325647     DOI: 10.1016/j.ymeth.2004.03.020

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  12 in total

1.  Evidence for liquid water during the high-density to low-density amorphous ice transition.

Authors:  Chae Un Kim; Buz Barstow; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-03       Impact factor: 11.205

2.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

3.  Large-volume protein crystal growth for neutron macromolecular crystallography.

Authors:  Joseph D Ng; James K Baird; Leighton Coates; Juan M Garcia-Ruiz; Teresa A Hodge; Sijay Huang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-30       Impact factor: 1.056

4.  Initial crystallographic studies of a small heat-shock protein from Xylella fastidiosa.

Authors:  Susely F S Tada; Antonio Marcos Saraiva; Gabriela S Lorite; Luciana K Rosselli-Murai; Alexandre César Pelloso; Marcelo Leite dos Santos; Daniela B B Trivella; Mônica A Cotta; Anete Pereira de Souza; Ricardo Aparicio
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-04-20

5.  Existence of twisting in dislocation-free protein single crystals.

Authors:  Marina Abe; Ryo Suzuki; Keiichi Hirano; Haruhiko Koizumi; Kenichi Kojima; Masaru Tachibana
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-16       Impact factor: 12.779

6.  Crystal structure of O-methyltransferase CalO6 from the calicheamicin biosynthetic pathway: a case of challenging structure determination at low resolution.

Authors:  Oleg V Tsodikov; Caixia Hou; Christopher T Walsh; Sylvie Garneau-Tsodikova
Journal:  BMC Struct Biol       Date:  2015-07-15

7.  Room-temperature serial crystallography using a kinetically optimized microfluidic device for protein crystallization and on-chip X-ray diffraction.

Authors:  Michael Heymann; Achini Opthalage; Jennifer L Wierman; Sathish Akella; Doletha M E Szebenyi; Sol M Gruner; Seth Fraden
Journal:  IUCrJ       Date:  2014-08-25       Impact factor: 4.769

8.  Whole-pattern fitting technique in serial femtosecond nanocrystallography.

Authors:  Ruben A Dilanian; Sophie R Williams; Andrew V Martin; Victor A Streltsov; Harry M Quiney
Journal:  IUCrJ       Date:  2016-02-12       Impact factor: 4.769

9.  Imperfection and radiation damage in protein crystals studied with coherent radiation.

Authors:  Colin Nave; Geoff Sutton; Gwyndaf Evans; Robin Owen; Christoph Rau; Ian Robinson; David Ian Stuart
Journal:  J Synchrotron Radiat       Date:  2016-01-01       Impact factor: 2.616

10.  Correlation between protein sequence similarity and crystallization reagents in the biological macromolecule crystallization database.

Authors:  Hui-Meng Lu; Da-Chuan Yin; Yong-Ming Liu; Wei-Hong Guo; Ren-Bin Zhou
Journal:  Int J Mol Sci       Date:  2012-07-27       Impact factor: 6.208

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