Literature DB >> 15322828

Allelic drop-out in the STR system ACTBP2 (SE33) as a result of mutations in the primer binding region.

Marielle Heinrich1, Miriam Müller, Steven Rand, Bernd Brinkmann, Carsten Hohoff.   

Abstract

In the course of routine genotyping of forensic reference samples by multiplex PCR, an allelic drop-out due to mutations in the primer binding regions of the highly polymorphic STR marker ACTBP2 was observed in 17 samples. The variation rate was estimated to be 0.0014 (95% confidence interval: 0.0006-0.003). The most frequently found mutation was an G to A transition in the reverse primer binding region which was present in 14 out of 17 cases. To overcome the problem we have added a modified reverse primer to different multiplex kits that led to the correct genotype.

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Year:  2004        PMID: 15322828     DOI: 10.1007/s00414-004-0473-0

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  13 in total

1.  Frequency data for the STR locus ACTBP2 (SE33) in eight populations.

Authors:  A Lászik; P Sótonyi; S Rand; C Hohoff
Journal:  Int J Legal Med       Date:  2001-10       Impact factor: 2.686

2.  Variations in primer sequences are the origin of allele drop-out at loci D13S317 and CD4.

Authors:  L Boutrand; B Egyed; S Füredi; N Mommers; G Mertens; A Vandenberghe
Journal:  Int J Legal Med       Date:  2001       Impact factor: 2.686

3.  Allele frequency data for 16 STR loci in the Vietnamese population.

Authors:  I Shimada; B Brinkmann; N Q Tuyen; C Hohoff
Journal:  Int J Legal Med       Date:  2002-08       Impact factor: 2.686

4.  Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles.

Authors:  Craig Leibelt; Bruce Budowle; Patrick Collins; Yasser Daoudi; Tamyra Moretti; Gary Nunn; Dennis Reeder; Rhonda Roby
Journal:  Forensic Sci Int       Date:  2003-05-05       Impact factor: 2.395

5.  Validation of the multiplex kit genRESMPX-2 for forensic casework analysis.

Authors:  A Junge; T Lederer; G Braunschweiger; B Madea
Journal:  Int J Legal Med       Date:  2003-10-10       Impact factor: 2.686

6.  Development of the AmpFISTR SEfiler PCR amplification kit: a new multiplex containing the highly discriminating ACTBP2 (SE33) locus.

Authors:  Sulekha Rao Coticone; Nicola Oldroyd; Heidi Philips; Paul Foxall
Journal:  Int J Legal Med       Date:  2004-05-15       Impact factor: 2.686

7.  Tetranucleotide repeat polymorphism at the human beta-actin related pseudogene H-beta-Ac-psi-2 (ACTBP2).

Authors:  M H Polymeropoulos; D S Rath; H Xiao; C R Merril
Journal:  Nucleic Acids Res       Date:  1992-03-25       Impact factor: 16.971

8.  Simultaneous determination of STR polymorphism and a new nucleotide substitution in its flanking region at the CD4 locus.

Authors:  G Watanabe; K Umetsu; I Yuasa; T Suzuki
Journal:  J Forensic Sci       Date:  1998-07       Impact factor: 1.832

9.  Influence of different staining techniques on the DNA analysis of histological sections.

Authors:  S Banaschak; B Rolf; B Brinkmann
Journal:  Int J Legal Med       Date:  2000       Impact factor: 2.686

10.  Primer binding site mutations affecting the typing of STR loci contained within the AMPFlSTR SGM Plus kit.

Authors:  T M Clayton; S M Hill; L A Denton; S K Watson; A J Urquhart
Journal:  Forensic Sci Int       Date:  2004-01-28       Impact factor: 2.395

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  15 in total

1.  Mutations or exclusion: an unusual case in paternity testing.

Authors:  A Junge; B Brinkmann; R Fimmers; B Madea
Journal:  Int J Legal Med       Date:  2005-11-19       Impact factor: 2.686

2.  Characterisation of variant alleles in the STR systems D2S1338, D3S1358 and D19S433.

Authors:  Marielle Heinrich; Heike Felske-Zech; Bernd Brinkmann; Carsten Hohoff
Journal:  Int J Legal Med       Date:  2005-06-18       Impact factor: 2.686

3.  Mother-child exclusion due to paternal uniparental disomy 6.

Authors:  R Wegener; V Weirich; E M Dauber; W R Mayr
Journal:  Int J Legal Med       Date:  2006-04-08       Impact factor: 2.686

4.  Meiosis study in a population sample from Afghanistan: allele frequencies and mutation rates of 16 STR loci.

Authors:  Carsten Hohoff; Marianne Schürenkamp; Torsten Börchers; Marjon Eppink; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2006-07-13       Impact factor: 2.686

5.  Multistep microsatellite mutation in the maternally transmitted locus D13S317: a case of maternal allele mismatch in the child.

Authors:  Devinder Singh Negi; Mahfooz Alam; S Annapurna Bhavani; Javaregowda Nagaraju
Journal:  Int J Legal Med       Date:  2006-03-03       Impact factor: 2.686

6.  Characterization of two unusual allele variants at the STR locus ACTBP2 (SE33).

Authors:  Thomas Lederer; Günther Braunschweiger; Bettina Dunkelmann; Peter Betz
Journal:  Forensic Sci Med Pathol       Date:  2008-01-05       Impact factor: 2.007

7.  Meiosis study in a population sample from Nigeria: allele frequencies and mutation rates of 16 STR loci.

Authors:  Carsten Hohoff; Marianne Schürenkamp; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-01-21       Impact factor: 2.686

8.  Haplotype-assisted characterization of germline mutations at short tandem repeat loci.

Authors:  Miriam Müller; Ulla Sibbing; Carsten Hohoff; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-11-11       Impact factor: 2.686

9.  Y-STR haplotypes in populations from the Eastern Mediterranean region of Turkey.

Authors:  Lale Dönbak; Thomas Bajanowski; Bernd Brinkmann; Carsten Hohoff
Journal:  Int J Legal Med       Date:  2006-08-08       Impact factor: 2.686

10.  Development and validation of a novel 26-plex system for prenatal diagnosis with forensic markers.

Authors:  Mingkun Xie; Jienan Li; Huan Hu; Panpan Wang; Xueqi Cong; Jingzhi Li; Lei Dai; Yang Lu; Weishe Zhang
Journal:  Int J Legal Med       Date:  2022-01-31       Impact factor: 2.686

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