Literature DB >> 15318005

Membrane protein structure determination using solid-state NMR.

Anthony Watts1, Suzana K Straus, Stephan L Grage, Miya Kamihira, Yuen Han Lam, Xin Zhao.   

Abstract

Solid-state NMR is emerging as a method for resolving structural information for large biomolecular complexes, such as membrane-embedded proteins. In principle, there is no molecular weight limit to the use of the approach, although the complexity and volume of data is still outside complete assignment and structural determinations for any large (Mr > approx 30,000) complex unless specific methods to reduce the information content to a manageable amount are employed. Such methods include specific residue-type labeling, labeling of putative segments of a protein, or examination of complexes made up of smaller, manageable units, such as oligomeric ion channels. Labeling possibilities are usually limited to recombinant or synthesized proteins, and labeling strategies often follow models from a bioinformatics approach. In all cases, and in common with most membrane studies, sample preparation is vital, and this activity alone can take considerable effort before NMR can be applied--peptide or protein production (synthesis or expression) followed by reconstitution into bilayers and resolution of suitable sample geometry is still technically challenging. As experience is gained in the field, this development time should decrease. Here, the practical aspects of the use of solid-state NMR for membrane protein structural determinations are presented, as well as how the methodology can be applied. Some successes to date are discussed, with an indication of how the area might develop.

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Year:  2004        PMID: 15318005     DOI: 10.1385/1-59259-809-9:403

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

Review 1.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

2.  Optimizing oriented planar-supported lipid samples for solid-state protein NMR.

Authors:  Jan K Rainey; Brian D Sykes
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

Review 3.  Biophysics of α-synuclein membrane interactions.

Authors:  Candace M Pfefferkorn; Zhiping Jiang; Jennifer C Lee
Journal:  Biochim Biophys Acta       Date:  2011-07-28

Review 4.  SDSL-ESR-based protein structure characterization.

Authors:  Janez Strancar; Aleh Kavalenka; Iztok Urbancic; Ajasja Ljubetic; Marcus A Hemminga
Journal:  Eur Biophys J       Date:  2009-08-11       Impact factor: 1.733

Review 5.  Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy.

Authors:  Akira Naito; Nobuaki Matsumori; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-06-06       Impact factor: 3.770

6.  Helix conformations in 7TM membrane proteins determined using oriented-sample solid-state NMR with multiple residue-specific 15N labeling.

Authors:  Thomas Vosegaard; Miya Kamihira-Ishijima; Anthony Watts; Niels Chr Nielsen
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

7.  Membrane protein structure determination: back to the membrane.

Authors:  Yong Yao; Yi Ding; Ye Tian; Stanley J Opella; Francesca M Marassi
Journal:  Methods Mol Biol       Date:  2013
  7 in total

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