Literature DB >> 15317977

Tissue-specific modification of gld-2 mRNA in C. elegans: likely C-to-U editing.

Liaoteng Wang1, Judith Kimble, Marvin Wickens.   

Abstract

Seventeen years after the discovery of tissue-specific apoB mRNA editing, only three nucleus-encoded mRNAs have been shown to undergo C-to-U editing. All three mRNAs occur in mammals. apoB mRNA editing is tissue-specific and occurs normally, whereas NF1 and NAT1 mRNA editing is found largely in tumors. Here we report the first example of C-to-U RNA editing in Caenorhabditis elegans. The gld-2 gene encodes an atypical poly(A) polymerase that governs the mitosis/meiosis decision in the germ line as well as progression through meiosis and early embryogenesis. At least two of its alternatively spliced transcripts are germline-specific. We find that most and perhaps all germline-specific transcripts generated by the gld-2 gene undergo C-to-U editing, but that somatic transcripts show no detectable editing. The gld-2 C-to-U editing event changes the codon from CCG to CUG, which is predicted to cause a proline to leucine substitution in the protein sequence. Our findings suggest the presence of a sequence- and tissue-specific cytidine deaminase acting on RNA, or CDAR. This CDAR modifies a specific base in gld-2 mRNA, and acts only in the germline.

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Year:  2004        PMID: 15317977      PMCID: PMC1370630          DOI: 10.1261/rna.7570804

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  31 in total

1.  Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.

Authors:  J Gough; K Karplus; R Hughey; C Chothia
Journal:  J Mol Biol       Date:  2001-11-02       Impact factor: 5.469

Review 2.  RNA editing by base deamination: more enzymes, more targets, new mysteries.

Authors:  A P Gerber; W Keller
Journal:  Trends Biochem Sci       Date:  2001-06       Impact factor: 13.807

3.  Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III.

Authors:  P Gönczy; C Echeverri; K Oegema; A Coulson; S J Jones; R R Copley; J Duperon; J Oegema; M Brehm; E Cassin; E Hannak; M Kirkham; S Pichler; K Flohrs; A Goessen; S Leidel; A M Alleaume; C Martin; N Ozlü; P Bork; A A Hyman
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

Review 4.  C-to-U RNA editing: mechanisms leading to genetic diversity.

Authors:  Valerie Blanc; Nicholas O Davidson
Journal:  J Biol Chem       Date:  2002-11-20       Impact factor: 5.157

5.  RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs.

Authors:  P Giegé; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

6.  C-->U editing of neurofibromatosis 1 mRNA occurs in tumors that express both the type II transcript and apobec-1, the catalytic subunit of the apolipoprotein B mRNA-editing enzyme.

Authors:  Debnath Mukhopadhyay; Shrikant Anant; Robert M Lee; Susan Kennedy; David Viskochil; Nicholas O Davidson
Journal:  Am J Hum Genet       Date:  2001-11-27       Impact factor: 11.025

7.  Identification of the yeast cytidine deaminase CDD1 as an orphan C-->U RNA editase.

Authors:  G S Dance; P Beemiller; Y Yang; D V Mater; I S Mian; H C Smith
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

8.  An adenosine deaminase that generates inosine at the wobble position of tRNAs.

Authors:  A P Gerber; W Keller
Journal:  Science       Date:  1999-11-05       Impact factor: 47.728

9.  A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans.

Authors:  Liaoteng Wang; Christian R Eckmann; Lisa C Kadyk; Marvin Wickens; Judith Kimble
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

10.  Biochemical and molecular characterization of two cytidine deaminases in the nematode Caenorhabditis elegans.

Authors:  Fiona J Thompson; Collette Britton; Isla Wheatley; Kirsty Maitland; Glenda Walker; Shrikant Anant; Nicholas O Davidson; Eileen Devaney
Journal:  Biochem J       Date:  2002-07-01       Impact factor: 3.857

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  5 in total

1.  Hippocampal Characteristics and Invariant Sequence Elements Distribution of GLRA2 and GLRA3 C-to-U Editing.

Authors:  Philipp Schaefermeier; Sarah Heinze
Journal:  Mol Syndromol       Date:  2016-12-16

Review 2.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

3.  Profiling the RNA editomes of wild-type C. elegans and ADAR mutants.

Authors:  Han-Qing Zhao; Pan Zhang; Hua Gao; Xiandong He; Yanmei Dou; August Y Huang; Xi-Ming Liu; Adam Y Ye; Meng-Qiu Dong; Liping Wei
Journal:  Genome Res       Date:  2014-11-04       Impact factor: 9.043

4.  The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution.

Authors:  Adam D Warner; Louis Gevirtzman; LaDeana W Hillier; Brent Ewing; Robert H Waterston
Journal:  Genome Res       Date:  2019-05-23       Impact factor: 9.043

5.  Nucleotide levels regulate germline proliferation through modulating GLP-1/Notch signaling in C. elegans.

Authors:  Congwu Chi; Diana Ronai; Minh T Than; Cierra J Walker; Aileen K Sewell; Min Han
Journal:  Genes Dev       Date:  2016-02-01       Impact factor: 11.361

  5 in total

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