Literature DB >> 15306463

Statics and dynamics of condensed DNA within phages and globules.

Theo Odijk1.   

Abstract

Several controversial issues concerning the packing of linear DNA in bacteriophages and globules are discussed. Exact relations for the osmotic pressure, capsid pressure and loading force are derived in terms of the hole size inside phages under the assumption that the DNA globule has a uniform density. A new electrostatic model is introduced for computing the osmotic pressure of rod-like polyelectrolytes at very high concentrations. At intermediate packing, a reptation model is considered for DNA diffusing within a toroidal globule. Under tight-packing conditions a model of Coulomb sliding friction is proposed. A general discussion is given of our current understanding of the statics and dynamics of confined DNA in the context of the following experiments: characterization of the liquid crystalline phases, X-ray scattering by phages, osmotic-stress measurements, cyclization within globules and single-molecule determination of the loading forces.

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Year:  2004        PMID: 15306463     DOI: 10.1098/rsta.2004.1385

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  19 in total

1.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

2.  Dynamics of DNA ejection from bacteriophage.

Authors:  Mandar M Inamdar; William M Gelbart; Rob Phillips
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

3.  Charge structure and counterion distribution in hexagonal DNA liquid crystal.

Authors:  Liang Dai; Yuguang Mu; Lars Nordenskiöld; Alain Lapp; Johan R C van der Maarel
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

Review 4.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

5.  Osmotic pressure and packaging structure of caged DNA.

Authors:  Zhidong Li; Jianzhong Wu; Zhen-Gang Wang
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

6.  Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29.

Authors:  John Peter Rickgauer; Derek N Fuller; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Douglas E Smith
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

7.  The effect of genome length on ejection forces in bacteriophage lambda.

Authors:  Paul Grayson; Alex Evilevitch; Mandar M Inamdar; Prashant K Purohit; William M Gelbart; Charles M Knobler; Rob Phillips
Journal:  Virology       Date:  2006-02-15       Impact factor: 3.616

8.  Stuffing a virus with DNA: dissecting viral genome packaging.

Authors:  Mark C Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-26       Impact factor: 11.205

9.  Communication: Origin of the contributions to DNA structure in phages.

Authors:  Christopher G Myers; B Montgomery Pettitt
Journal:  J Chem Phys       Date:  2013-02-21       Impact factor: 3.488

10.  Solid-to-fluid-like DNA transition in viruses facilitates infection.

Authors:  Ting Liu; Udom Sae-Ueng; Dong Li; Gabriel C Lander; Xiaobing Zuo; Bengt Jönsson; Donald Rau; Ivetta Shefer; Alex Evilevitch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-30       Impact factor: 11.205

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