Literature DB >> 15306378

Protein structure, stability and solubility in water and other solvents.

C Nick Pace1, Saul Treviño, Erode Prabhakaran, J Martin Scholtz.   

Abstract

Proteins carry out the most difficult tasks in living cells. They do so by interacting specifically with other molecules. This requires that they fold to a unique, globular conformation that is only marginally more stable than the large ensemble of unfolded states. The folded state is stabilized mainly by the burial and tight packing of over 80% of the peptide groups and non-polar side chains. If life as we know it is to exist in a solvent other than water, the folded state must be stable and soluble in the new solvent. Our analysis suggests that proteins will be unstable in most polar solvents such as ethanol, extremely stable in non-polar solvents such as cyclohexane, and even more stable in a vacuum. Our solubility studies suggest that protein solubility will be markedly lower in polar solvents such as ethanol and that proteins will be essentially insoluble in non-polar solvents such as cyclohexane. For these and other reasons it seems unlikely that the life we know could exist in any solvent system other than water.

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Year:  2004        PMID: 15306378      PMCID: PMC1693406          DOI: 10.1098/rstb.2004.1500

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  64 in total

1.  The packing density in proteins: standard radii and volumes.

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Journal:  J Mol Biol       Date:  1999-07-02       Impact factor: 5.469

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Journal:  Nat Struct Biol       Date:  2000-05

3.  Solution structure and dynamics of ribonuclease Sa.

Authors:  D Laurents; J M Pérez-Cañadillas; J Santoro; M Rico; D Schell; C N Pace; M Bruix
Journal:  Proteins       Date:  2001-08-15

Review 4.  The osmophobic effect: natural selection of a thermodynamic force in protein folding.

Authors:  D W Bolen; I V Baskakov
Journal:  J Mol Biol       Date:  2001-07-27       Impact factor: 5.469

5.  Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.

Authors:  Raphael Guerois; Jens Erik Nielsen; Luis Serrano
Journal:  J Mol Biol       Date:  2002-07-05       Impact factor: 5.469

6.  The denatured state of Engrailed Homeodomain under denaturing and native conditions.

Authors:  Ugo Mayor; J Günter Grossmann; Nicholas W Foster; Stefan M V Freund; Alan R Fersht
Journal:  J Mol Biol       Date:  2003-11-07       Impact factor: 5.469

7.  The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins.

Authors:  A H Elcock
Journal:  J Mol Biol       Date:  1998-11-27       Impact factor: 5.469

8.  Dimensions of protein random coils.

Authors:  W G Miller; C V Goebel
Journal:  Biochemistry       Date:  1968-11       Impact factor: 3.162

9.  Hydrogen bonding stabilizes globular proteins.

Authors:  J K Myers; C N Pace
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

10.  pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme.

Authors:  D E Anderson; W J Becktel; F W Dahlquist
Journal:  Biochemistry       Date:  1990-03-06       Impact factor: 3.162

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  59 in total

1.  The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones.

Authors:  Traci B Topping; Lisa M Gloss
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

2.  The structure of gas-phase bradykinin fragment 1-5 (RPPGF) ions: an ion mobility spectrometry and H/D exchange ion-molecule reaction chemistry study.

Authors:  Holly A Sawyer; Joseph T Marini; Earle G Stone; Brandon T Ruotolo; Kent J Gillig; David H Russell
Journal:  J Am Soc Mass Spectrom       Date:  2005-06       Impact factor: 3.109

3.  Resurrecting abandoned proteins with pure water: CD and NMR studies of protein fragments solubilized in salt-free water.

Authors:  Minfen Li; Jingxian Liu; Xiaoyuan Ran; Miaoqing Fang; Jiahai Shi; Haina Qin; June-Mui Goh; Jianxing Song
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

Review 4.  The prospect of alien life in exotic forms on other worlds.

Authors:  Dirk Schulze-Makuch; Louis N Irwin
Journal:  Naturwissenschaften       Date:  2006-03-09

5.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

Review 6.  Protein ionizable groups: pK values and their contribution to protein stability and solubility.

Authors:  C Nick Pace; Gerald R Grimsley; J Martin Scholtz
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

7.  Energetics of protein hydrogen bonds.

Authors:  C Nick Pace
Journal:  Nat Struct Mol Biol       Date:  2009-07       Impact factor: 15.369

8.  Structures, basins, and energies: a deconstruction of the Protein Coil Library.

Authors:  Lauren L Perskie; Timothy O Street; George D Rose
Journal:  Protein Sci       Date:  2008-04-23       Impact factor: 6.725

9.  The effect of nanometre-scale structure on interfacial energy.

Authors:  Jeffrey J Kuna; Kislon Voïtchovsky; Chetana Singh; Hao Jiang; Steve Mwenifumbo; Pradip K Ghorai; Molly M Stevens; Sharon C Glotzer; Francesco Stellacci
Journal:  Nat Mater       Date:  2009-09-13       Impact factor: 43.841

10.  Methodology for measuring conformation of solvent-disrupted protein subunits using T-WAVE ion mobility MS: an investigation into eukaryotic initiation factors.

Authors:  Julie A Leary; Matthew R Schenauer; Raluca Stefanescu; Armann Andaya; Brandon T Ruotolo; Carol V Robinson; Konstantinos Thalassinos; James H Scrivens; Masaaki Sokabe; John W B Hershey
Journal:  J Am Soc Mass Spectrom       Date:  2009-05-20       Impact factor: 3.109

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