Literature DB >> 22297987

Lysozyme contamination facilitates crystallization of a heterotrimeric cortactin-Arg-lysozyme complex.

Weizhi Liu1, Stacey M MacGrath, Anthony J Koleske, Titus J Boggon.   

Abstract

Crystallization of contaminating proteins is a frequently encountered problem for macromolecular crystallographers. In this study, an attempt was made to obtain a binary cocrystal structure of the SH3 domain of cortactin and a 17-residue peptide from the Arg nonreceptor tyrosine kinase encompassing a PxxPxxPxxP (PxxP1) motif. However, cocrystals could only be obtained in the presence of trace amounts of a contaminating protein. A structure solution obtained by molecular replacement followed by ARP/wARP automatic model building allowed a 'sequence-by-crystallography' approach to discover that the contaminating protein was lysozyme. This 1.65 Å resolution crystal structure determination of a 1:1:1 heterotrimeric complex of Arg, cortactin and lysozyme thus provides an unusual `caveat emptor' warning of the dangers that underpurified proteins harbor for macromolecular crystallographers.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22297987      PMCID: PMC3274391          DOI: 10.1107/S1744309111056132

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Bound-solvent structures for microgravity-, ground control-, gel- and microbatch-grown hen egg-white lysozyme crystals at 1.8 A resolution.

Authors:  J Dong; T J Boggon; N E Chayen; J Raftery; R C Bi; J R Helliwell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

Review 2.  High-throughput proteomics: protein expression and purification in the postgenomic world.

Authors:  S A Lesley
Journal:  Protein Expr Purif       Date:  2001-07       Impact factor: 1.650

3.  Towards complete validated models in the next generation of ARP/wARP.

Authors:  Serge X Cohen; Richard J Morris; Francisco J Fernandez; Marouane Ben Jelloul; Mattheos Kakaris; Venkataraman Parthasarathy; Victor S Lamzin; Gerard J Kleywegt; Anastassis Perrakis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 4.  Specificity and versatility of SH3 and other proline-recognition domains: structural basis and implications for cellular signal transduction.

Authors:  Shawn S-C Li
Journal:  Biochem J       Date:  2005-09-15       Impact factor: 3.857

5.  Structural basis for oligosaccharide recognition by Pyrococcus furiosus maltodextrin-binding protein.

Authors:  A G Evdokimov; D E Anderson; K M Routzahn; D S Waugh
Journal:  J Mol Biol       Date:  2001-01-26       Impact factor: 5.469

6.  Real-space refinement of the structure of hen egg-white lysozyme.

Authors:  R Diamond
Journal:  J Mol Biol       Date:  1974-01-25       Impact factor: 5.469

7.  Structure elucidation of beta-mannanase: from the electron-density map to the DNA sequence.

Authors:  M Hilge; A Perrakis; J P Abrahams; K Winterhalter; K Piontek; S M Gloor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

8.  High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission.

Authors:  M C Vaney; S Maignan; M Riès-Kautt; A Ducriux
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01

9.  Arg interacts with cortactin to promote adhesion-dependent cell edge protrusion.

Authors:  Stefanie Lapetina; Christopher C Mader; Kazuya Machida; Bruce J Mayer; Anthony J Koleske
Journal:  J Cell Biol       Date:  2009-05-04       Impact factor: 10.539

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
View more
  9 in total

1.  Protein purification and crystallization artifacts: The tale usually not told.

Authors:  Ewa Niedzialkowska; Olga Gasiorowska; Katarzyna B Handing; Karolina A Majorek; Przemyslaw J Porebski; Ivan G Shabalin; Ewelina Zasadzinska; Marcin Cymborowski; Wladek Minor
Journal:  Protein Sci       Date:  2016-01-26       Impact factor: 6.725

2.  Abl2/Abl-related gene stabilizes actin filaments, stimulates actin branching by actin-related protein 2/3 complex, and promotes actin filament severing by cofilin.

Authors:  Naomi Courtemanche; Stacey M Gifford; Mark A Simpson; Thomas D Pollard; Anthony J Koleske
Journal:  J Biol Chem       Date:  2014-12-24       Impact factor: 5.157

3.  Abl2:Cortactin Interactions Regulate Dendritic Spine Stability via Control of a Stable Filamentous Actin Pool.

Authors:  Juliana E Shaw; Michaela B C Kilander; Yu-Chih Lin; Anthony J Koleske
Journal:  J Neurosci       Date:  2021-02-23       Impact factor: 6.167

4.  A novel Pyk2-derived peptide inhibits invadopodia-mediated breast cancer metastasis.

Authors:  Shams Twafra; Chana G Sokolik; Tal Sneh; Kolluru D Srikanth; Tomer Meirson; Alessandro Genna; Jordan H Chill; Hava Gil-Henn
Journal:  Oncogene       Date:  2022-10-18       Impact factor: 8.756

5.  Arg/Abl2 modulates the affinity and stoichiometry of binding of cortactin to F-actin.

Authors:  Stacey M MacGrath; Anthony J Koleske
Journal:  Biochemistry       Date:  2012-08-10       Impact factor: 3.162

6.  Two amino acid residues confer different binding affinities of Abelson family kinase SRC homology 2 domains for phosphorylated cortactin.

Authors:  Stacey M Gifford; Weizhi Liu; Christopher C Mader; Tiffany L Halo; Kazuya Machida; Titus J Boggon; Anthony J Koleske
Journal:  J Biol Chem       Date:  2014-06-02       Impact factor: 5.157

7.  Abl2/Arg controls dendritic spine and dendrite arbor stability via distinct cytoskeletal control pathways.

Authors:  Yu-Chih Lin; Mark F Yeckel; Anthony J Koleske
Journal:  J Neurosci       Date:  2013-01-30       Impact factor: 6.167

8.  The repeat region of cortactin is intrinsically disordered in solution.

Authors:  Xiaofeng Li; Yeqing Tao; James W Murphy; Alexander N Scherer; TuKiet T Lam; Alan G Marshall; Anthony J Koleske; Titus J Boggon
Journal:  Sci Rep       Date:  2017-12-01       Impact factor: 4.379

9.  Abl2 is recruited to ventral actin waves through cytoskeletal interactions to promote lamellipodium extension.

Authors:  Ke Zhang; Wanqing Lyu; Ji Yu; Anthony J Koleske
Journal:  Mol Biol Cell       Date:  2018-09-26       Impact factor: 4.138

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.