Literature DB >> 12486711

Deep trefoil knot implicated in RNA binding found in an archaebacterial protein.

Thomas I Zarembinski1, Youngchang Kim, Kelly Peterson, Dinesh Christendat, Akil Dharamsi, Cheryl H Arrowsmith, Aled M Edwards, Andrzej Joachimiak.   

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Year:  2003        PMID： 12486711      PMCID： PMC2792022          DOI： 10.1002/prot.10311

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  26 in total

1.  Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.

Authors:  R Jansen; M Gerstein
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels.

Authors:  N Nagano; E G Hutchinson; J M Thornton
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

3.  Escherichia coli CspA-family RNA chaperones are transcription antiterminators.

Authors:  W Bae; B Xia; M Inouye; K Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

4.  A deeply knotted protein structure and how it might fold.

Authors:  W R Taylor
Journal:  Nature       Date:  2000-08-24       Impact factor: 49.962

5.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

6.  CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone.

Authors:  W Jiang; Y Hou; M Inouye
Journal:  J Biol Chem       Date:  1997-01-03       Impact factor: 5.157

Review 7.  The TIM-barrel fold: a versatile framework for efficient enzymes.

Authors:  R K Wierenga
Journal:  FEBS Lett       Date:  2001-03-16       Impact factor: 4.124

8.  BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure.

Authors:  Haijuan Yang; Philip D Jeffrey; Julie Miller; Elspeth Kinnucan; Yutong Sun; Nicolas H Thoma; Ning Zheng; Phang-Lang Chen; Wen-Hwa Lee; Nikola P Pavletich
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

9.  Crystal structure of CspA, the major cold shock protein of Escherichia coli.

Authors:  H Schindelin; W Jiang; M Inouye; U Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-24       Impact factor: 11.205

10.  Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution.

Authors:  H Song; M R Parsons; S Rowsell; G Leonard; S E Phillips
Journal:  J Mol Biol       Date:  1999-01-22       Impact factor: 5.469
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  12 in total

1.  Database searching by flexible protein structure alignment.

Authors:  Yuzhen Ye; Adam Godzik
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

2.  Conference report--structural genomics: parsing the architecture of proteins highlights of the ABRF 2004--integrating technologies in proteomics and genomics, February 28-March 2, 2004; Portland, Oregon.

Authors:  Sara M Mariani
Journal:  MedGenMed       Date:  2004-04-16

3.  The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP.

Authors:  Marie-Hélène Renalier; Nicole Joseph; Christine Gaspin; Patricia Thebault; Annie Mougin
Journal:  RNA       Date:  2005-07       Impact factor: 4.942

4.  The folding mechanics of a knotted protein.

Authors:  Stefan Wallin; Konstantin B Zeldovich; Eugene I Shakhnovich
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

5.  Functional insights from structural genomics.

Authors:  Farhad Forouhar; Alexandre Kuzin; Jayaraman Seetharaman; Insun Lee; Weihong Zhou; Mariam Abashidze; Yang Chen; Wei Yong; Haleema Janjua; Yingyi Fang; Dongyan Wang; Kellie Cunningham; Rong Xiao; Thomas B Acton; Eran Pichersky; Daniel F Klessig; Carl W Porter; Gaetano T Montelione; Liang Tong
Journal:  J Struct Funct Genomics       Date:  2007-06-23

6.  Post-translational modification of ribosomal proteins: structural and functional characterization of RimO from Thermotoga maritima, a radical S-adenosylmethionine methylthiotransferase.

Authors:  Simon Arragain; Ricardo Garcia-Serres; Geneviève Blondin; Thierry Douki; Martin Clemancey; Jean-Marc Latour; Farhad Forouhar; Helen Neely; Gaetano T Montelione; John F Hunt; Etienne Mulliez; Marc Fontecave; Mohamed Atta
Journal:  J Biol Chem       Date:  2009-12-09       Impact factor: 5.157

7.  Flexible recognition of the tRNA G18 methylation target site by TrmH methyltransferase through first binding and induced fit processes.

Authors:  Anna Ochi; Koki Makabe; Kunihiro Kuwajima; Hiroyuki Hori
Journal:  J Biol Chem       Date:  2010-01-06       Impact factor: 5.157

8.  Crystal structure of tRNA(m1G37)methyltransferase: insights into tRNA recognition.

Authors:  Hyung Jun Ahn; Hyeon-Woo Kim; Hye-Jin Yoon; Byung Il Lee; Se Won Suh; Jin Kuk Yang
Journal:  EMBO J       Date:  2003-06-02       Impact factor: 11.598

9.  The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics.

Authors:  Shinya Ohta; Jimi-Carlo Bukowski-Wills; Luis Sanchez-Pulido; Flavia de Lima Alves; Laura Wood; Zhuo A Chen; Melpi Platani; Lutz Fischer; Damien F Hudson; Chris P Ponting; Tatsuo Fukagawa; William C Earnshaw; Juri Rappsilber
Journal:  Cell       Date:  2010-09-03       Impact factor: 41.582

10.  Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.

Authors:  Karolina L Tkaczuk; Stanislaw Dunin-Horkawicz; Elzbieta Purta; Janusz M Bujnicki
Journal:  BMC Bioinformatics       Date:  2007-03-05       Impact factor: 3.169
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