Literature DB >> 32868887

Novel bacterial clade reveals origin of form I Rubisco.

Jose H Pereira1,2, Albert K Liu3,4, Douglas M Banda3,4, Douglas J Orr5, Michal Hammel2, Christine He6, Martin A J Parry5, Elizabete Carmo-Silva5, Paul D Adams1,2, Jillian F Banfield7,8,9,10, Patrick M Shih11,12,13,14.   

Abstract

Rubisco sustains the biosphere through the fixation of CO2 into biomass. In plants and cyanobacteria, form I Rubisco is structurally comprised of large and small subunits, whereas all other Rubisco forms lack small subunits. The rise of the form I complex through the innovation of small subunits represents a key, yet poorly understood, transition in Rubisco's evolution. Through metagenomic analyses, we discovered a previously uncharacterized clade sister to form I Rubisco that evolved without small subunits. This clade diverged before the evolution of cyanobacteria and the origin of the small subunit; thus, it provides a unique reference point to advance our understanding of form I Rubisco evolution. Structural and kinetic data presented here reveal how a proto-form I Rubisco assembled and functioned without the structural stability imparted from small subunits. Our findings provide insight into a key evolutionary transition of the most abundant enzyme on Earth and the predominant entry point for nearly all global organic carbon.

Entities:  

Year:  2020        PMID: 32868887     DOI: 10.1038/s41477-020-00762-4

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  62 in total

Review 1.  Organization and regulation of cbb CO2 assimilation genes in autotrophic bacteria.

Authors:  B Kusian; B Bowien
Journal:  FEMS Microbiol Rev       Date:  1997-09       Impact factor: 16.408

Review 2.  Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs.

Authors:  F Robert Tabita; Thomas E Hanson; Huiying Li; Sriram Satagopan; Jaya Singh; Sum Chan
Journal:  Microbiol Mol Biol Rev       Date:  2007-12       Impact factor: 11.056

3.  Coupled chaperone action in folding and assembly of hexadecameric Rubisco.

Authors:  Cuimin Liu; Anna L Young; Amanda Starling-Windhof; Andreas Bracher; Sandra Saschenbrecker; Bharathi Vasudeva Rao; Karnam Vasudeva Rao; Otto Berninghausen; Thorsten Mielke; F Ulrich Hartl; Roland Beckmann; Manajit Hayer-Hartl
Journal:  Nature       Date:  2010-01-14       Impact factor: 49.962

4.  Side reactions catalyzed by ribulose-bisphosphate carboxylase in the presence and absence of small subunits.

Authors:  M K Morell; J M Wilkin; H J Kane; T J Andrews
Journal:  J Biol Chem       Date:  1997-02-28       Impact factor: 5.157

5.  Role of small subunit in mediating assembly of red-type form I Rubisco.

Authors:  Jidnyasa Joshi; Oliver Mueller-Cajar; Yi-Chin C Tsai; F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  J Biol Chem       Date:  2014-11-04       Impact factor: 5.157

6.  A reversible decrease in ribulose 1,5-bisphosphate carboxylase/oxygenase carboxylation activity caused by the aggregation of the enzyme's large subunit is triggered in response to the exposure of moderate irradiance-grown plants to low irradiance.

Authors:  Magda Grabsztunowicz; Zbigniew Górski; Robert Luciński; Grzegorz Jackowski
Journal:  Physiol Plant       Date:  2015-02-10       Impact factor: 4.500

7.  The gene for the ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) small subunit relocated to the plastid genome of tobacco directs the synthesis of small subunits that assemble into Rubisco.

Authors:  S M Whitney; T J Andrews
Journal:  Plant Cell       Date:  2001-01       Impact factor: 11.277

8.  Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi.

Authors:  Patrick M Shih; Lewis M Ward; Woodward W Fischer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-18       Impact factor: 11.205

Review 9.  Role of the small subunit in ribulose-1,5-bisphosphate carboxylase/oxygenase.

Authors:  Robert J Spreitzer
Journal:  Arch Biochem Biophys       Date:  2003-06-15       Impact factor: 4.013

10.  Catalysis by cyanobacterial ribulose-bisphosphate carboxylase large subunits in the complete absence of small subunits.

Authors:  T J Andrews
Journal:  J Biol Chem       Date:  1988-09-05       Impact factor: 5.157

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  8 in total

1.  Improving photosynthesis through multidisciplinary efforts: The next frontier of photosynthesis research.

Authors:  Xin-Guang Zhu; Mirza Hasanuzzaman; Anjana Jajoo; Tracy Lawson; Rongcheng Lin; Chun-Ming Liu; Lu-Ning Liu; Zhenfeng Liu; Congming Lu; Michael Moustakas; Thomas Roach; Qingfeng Song; Xinyou Yin; Wangfeng Zhang
Journal:  Front Plant Sci       Date:  2022-09-30       Impact factor: 6.627

Review 2.  X-ray scattering reveals disordered linkers and dynamic interfaces in complexes and mechanisms for DNA double-strand break repair impacting cell and cancer biology.

Authors:  Michal Hammel; John A Tainer
Journal:  Protein Sci       Date:  2021-06-05       Impact factor: 6.993

Review 3.  Carbon Dioxide and the Carbamate Post-Translational Modification.

Authors:  Lynsay I Blake; Martin J Cann
Journal:  Front Mol Biosci       Date:  2022-03-01

4.  Improving the efficiency of Rubisco by resurrecting its ancestors in the family Solanaceae.

Authors:  Myat T Lin; Heidi Salihovic; Frances K Clark; Maureen R Hanson
Journal:  Sci Adv       Date:  2022-04-15       Impact factor: 14.957

5.  Structural plasticity enables evolution and innovation of RuBisCO assemblies.

Authors:  Albert K Liu; Jose H Pereira; Alexander J Kehl; Daniel J Rosenberg; Douglas J Orr; Simon K S Chu; Douglas M Banda; Michal Hammel; Paul D Adams; Justin B Siegel; Patrick M Shih
Journal:  Sci Adv       Date:  2022-08-26       Impact factor: 14.957

6.  Interspecies Comparison of Interaction Energies between Photosynthetic Protein RuBisCO and 2CABP Ligand.

Authors:  Masayasu Fujii; Shigenori Tanaka
Journal:  Int J Mol Sci       Date:  2022-09-26       Impact factor: 6.208

7.  Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off.

Authors:  Jacques W Bouvier; David M Emms; Timothy Rhodes; Jai S Bolton; Amelia Brasnett; Alice Eddershaw; Jochem R Nielsen; Anastasia Unitt; Spencer M Whitney; Steven Kelly
Journal:  Mol Biol Evol       Date:  2021-06-25       Impact factor: 16.240

8.  An Insight of RuBisCO Evolution through a Multilevel Approach.

Authors:  Vladimir Camel; Gaston Zolla
Journal:  Biomolecules       Date:  2021-11-25
  8 in total

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