Literature DB >> 15299012

Transformation of the mechanism of triple-helix peptide folding in the absence of a C-terminal nucleation domain and its implications for mutations in collagen disorders.

Alexei V Buevich1, Teresita Silva, Barbara Brodsky, Jean Baum.   

Abstract

Folding abnormalities of the triple helix have been demonstrated in collagen diseases such as osteogenesis imperfecta in which the mutation leads to the substitution of a single Gly in the (Gly-X-Y)n sequence pattern by a larger residue. Model peptides can be used to clarify the details of normal collagen folding and the consequences of the interruption of that folding by a Gly substitution. NMR and CD studies show that placement of a (GPO)4 nucleation domain at the N terminus rather than the C terminus of a native collagen sequence allows the formation of a stable triple helix but alters the folding mechanism. Although C- to N-terminal directional folding occurs when the nucleation domain is at the C terminus, there is no preferential folding direction when the nucleation domain is at the N terminus. The lack of zipper-like directional folding does not interfere with triple-helix formation, and when a Gly residue is replaced by Ser to model an osteogenesis imperfecta mutation, the peptide with the N-terminal (GPO)4 domain can still form a good triple helix N-terminal to the mutation site. These peptide studies raise the possibility that mutant collagen could fold in a C to N direction in a zipper-like manner up to the mutation site and that completion of the triple helix N-terminal to the mutation would involve an alternative mechanism.

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Year:  2004        PMID: 15299012     DOI: 10.1074/jbc.M407061200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  11 in total

1.  CD and NMR investigation of collagen peptides mimicking a pathological Gly-Ser mutation and a natural interruption in a similar highly charged sequence context.

Authors:  Xiuxia Sun; Songqing Liu; Wenyuan Yu; Shaoru Wang; Jianxi Xiao
Journal:  Protein Sci       Date:  2015-11-26       Impact factor: 6.725

2.  The folding mechanism of collagen-like model peptides explored through detailed molecular simulations.

Authors:  Collin M Stultz
Journal:  Protein Sci       Date:  2006-09       Impact factor: 6.725

3.  The NC16A domain of collagen XVII plays a role in triple helix assembly and stability.

Authors:  Françoise Van den Bergh; Chang-Ling Fu; Monica Olague-Marchan; George J Giudice
Journal:  Biochem Biophys Res Commun       Date:  2006-10-05       Impact factor: 3.575

4.  Empirical estimation of local dielectric constants: Toward atomistic design of collagen mimetic peptides.

Authors:  Douglas H Pike; Vikas Nanda
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

5.  Osteogenesis imperfecta model peptides: incorporation of residues replacing Gly within a triple helix achieved by renucleation and local flexibility.

Authors:  Jianxi Xiao; Balaraman Madhan; Yingjie Li; Barbara Brodsky; Jean Baum
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

Review 6.  Synthesis and biological applications of collagen-model triple-helical peptides.

Authors:  Gregg B Fields
Journal:  Org Biomol Chem       Date:  2010-01-20       Impact factor: 3.876

7.  ColGen: An end-to-end deep learning model to predict thermal stability of de novo collagen sequences.

Authors:  Chi-Hua Yu; Eesha Khare; Om Prakash Narayan; Rachael Parker; David L Kaplan; Markus J Buehler
Journal:  J Mech Behav Biomed Mater       Date:  2021-10-31

8.  Molecular underpinnings of integrin binding to collagen-mimetic peptides containing vascular Ehlers-Danlos syndrome-associated substitutions.

Authors:  Cody L Hoop; Allysa P Kemraj; Baifan Wang; Sonal Gahlawat; Madison Godesky; Jie Zhu; Haley R Warren; David A Case; David I Shreiber; Jean Baum
Journal:  J Biol Chem       Date:  2019-08-12       Impact factor: 5.157

9.  Imaging of type I procollagen biosynthesis in cells reveals biogenesis in highly organized bodies; Collagenosomes.

Authors:  Branko Stefanovic; Lela Stefanovic; Zarko Manojlovic
Journal:  Matrix Biol Plus       Date:  2021-06-23

Review 10.  Revealing Accessibility of Cryptic Protein Binding Sites within the Functional Collagen Fibril.

Authors:  Cody L Hoop; Jie Zhu; Ana Monica Nunes; David A Case; Jean Baum
Journal:  Biomolecules       Date:  2017-11-01
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