Literature DB >> 15289608

Evolvability is a selectable trait.

David J Earl1, Michael W Deem.   

Abstract

Concomitant with the evolution of biological diversity must have been the evolution of mechanisms that facilitate evolution, because of the essentially infinite complexity of protein sequence space. We describe how evolvability can be an object of Darwinian selection, emphasizing the collective nature of the process. We quantify our theory with computer simulations of protein evolution. These simulations demonstrate that rapid or dramatic environmental change leads to selection for greater evolvability. The selective pressure for large-scale genetic moves such as DNA exchange becomes increasingly strong as the environmental conditions become more uncertain. Our results demonstrate that evolvability is a selectable trait and allow for the explanation of a large body of experimental results.

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Year:  2004        PMID: 15289608      PMCID: PMC511006          DOI: 10.1073/pnas.0404656101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

Review 1.  Evolution of evolvability.

Authors:  M Radman; I Matic; F Taddei
Journal:  Ann N Y Acad Sci       Date:  1999-05-18       Impact factor: 5.691

Review 2.  Uprooting the tree of life.

Authors:  W F Doolittle
Journal:  Sci Am       Date:  2000-02       Impact factor: 2.142

Review 3.  Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes.

Authors:  B R Levin; C T Bergstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

Review 4.  Transposons and genome evolution in plants.

Authors:  N Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

5.  The many faces of DNA polymerases: strategies for mutagenesis and for mutational avoidance.

Authors:  E C Friedberg; W J Feaver; V L Gerlach
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

6.  A hierarchical approach to protein molecular evolution.

Authors:  L D Bogarad; M W Deem
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

7.  Evolving evolvability.

Authors:  L Partridge; N H Barton
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

8.  Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans.

Authors:  L Duret; G Marais; C Biémont
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

9.  DNA polymerases in immunity: profiting from errors.

Authors:  U Storb
Journal:  Nat Immunol       Date:  2001-06       Impact factor: 25.606

Review 10.  Homology-independent protein engineering.

Authors:  S Lutz; S J Benkovic
Journal:  Curr Opin Biotechnol       Date:  2000-08       Impact factor: 9.740

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  70 in total

1.  A model of genetic search for beneficial mutations: estimating the constructive capacities of mutagenesis.

Authors:  Grigory G Ananko
Journal:  J Mol Evol       Date:  2012-01-03       Impact factor: 2.395

2.  Dynamics of gene duplication and transposons in microbial genomes following a sudden environmental change.

Authors:  Nicholas Chia; Nicholas Guttenberg
Journal:  Mob Genet Elements       Date:  2011-09-01

3.  Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model.

Authors:  Tao Chen; David Vernazobres; Tetsuya Yomo; Erich Bornberg-Bauer; Hue Sun Chan
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

4.  Evolution of adaptive phenotypic variation patterns by direct selection for evolvability.

Authors:  Mihaela Pavlicev; James M Cheverud; Günter P Wagner
Journal:  Proc Biol Sci       Date:  2010-11-24       Impact factor: 5.349

5.  Statistical mechanics of integral membrane protein assembly.

Authors:  Karim Wahba; David Schwab; Robijn Bruinsma
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

6.  A multi-scale model for correlation in B cell VDJ usage of zebrafish.

Authors:  Keyao Pan; Michael W Deem
Journal:  Phys Biol       Date:  2011-08-10       Impact factor: 2.583

Review 7.  Something Old, Something New: Conserved Enzymes and the Evolution of Novelty in Plant Specialized Metabolism.

Authors:  Gaurav D Moghe; Robert L Last
Journal:  Plant Physiol       Date:  2015-08-14       Impact factor: 8.340

8.  Penicillin Trunk Injection Affects Bacterial Community Structure in Citrus Trees.

Authors:  Marina S Ascunce; Keumchul Shin; Jose C Huguet-Tapia; Ravin Poudel; Karen A Garrett; Ariena H C van Bruggen; Erica M Goss
Journal:  Microb Ecol       Date:  2018-12-01       Impact factor: 4.552

9.  Suppression of viral infectivity through lethal defection.

Authors:  Ana Grande-Pérez; Ester Lázaro; Pedro Lowenstein; Esteban Domingo; Susanna C Manrubia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

10.  Glassy dynamics in the adaptive immune response prevents autoimmune disease.

Authors:  Jun Sun; David J Earl; Michael W Deem
Journal:  Phys Rev Lett       Date:  2005-09-29       Impact factor: 9.161

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