Literature DB >> 22479691

Dynamics of gene duplication and transposons in microbial genomes following a sudden environmental change.

Nicholas Chia1, Nicholas Guttenberg.   

Abstract

The impact of gene duplication on evolution is as ubiquitous as point mutation, but this realization is not yet reflected in our quantitative models of population genetics. In this Commentary article, we explore the implications of such models of gene duplication, specifically expanding on our previous work. We lay down a framework for understanding the impact of gene duplications on the evolution a biological network and give an analytical argument based on the concept of mutational error threshold for the necessity of gene duplications for the evolution of complex networks. In other words, by realizing that the impact of mutations must act appropriately in order to allow for the maintenance of complex networks, we develop a mathematical scaling argument that shows why gene duplication provides the types of mutations more favorable to increasing complexity. In the process of doing so, we seek to explain the relationship between per base pair mutation rates and genome size.

Year:  2011        PMID: 22479691      PMCID: PMC3312306          DOI: 10.4161/mge.1.3.18030

Source DB:  PubMed          Journal:  Mob Genet Elements        ISSN: 2159-2543


  28 in total

1.  Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Authors:  Julian Parkhill; Mohammed Sebaihia; Andrew Preston; Lee D Murphy; Nicholas Thomson; David E Harris; Matthew T G Holden; Carol M Churcher; Stephen D Bentley; Karen L Mungall; Ana M Cerdeño-Tárraga; Louise Temple; Keith James; Barbara Harris; Michael A Quail; Mark Achtman; Rebecca Atkin; Steven Baker; David Basham; Nathalie Bason; Inna Cherevach; Tracey Chillingworth; Matthew Collins; Anne Cronin; Paul Davis; Jonathan Doggett; Theresa Feltwell; Arlette Goble; Nancy Hamlin; Heidi Hauser; Simon Holroyd; Kay Jagels; Sampsa Leather; Sharon Moule; Halina Norberczak; Susan O'Neil; Doug Ormond; Claire Price; Ester Rabbinowitsch; Simon Rutter; Mandy Sanders; David Saunders; Katherine Seeger; Sarah Sharp; Mark Simmonds; Jason Skelton; Robert Squares; Steven Squares; Kim Stevens; Louise Unwin; Sally Whitehead; Bart G Barrell; Duncan J Maskell
Journal:  Nat Genet       Date:  2003-08-10       Impact factor: 38.330

Review 2.  Mutation and epigenetic molecular clocks in cancer.

Authors:  Darryl Shibata
Journal:  Carcinogenesis       Date:  2010-11-12       Impact factor: 4.944

3.  Ohno's dilemma: evolution of new genes under continuous selection.

Authors:  Ulfar Bergthorsson; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

4.  Gene copy number variation spanning 60 million years of human and primate evolution.

Authors:  Laura Dumas; Young H Kim; Anis Karimpour-Fard; Michael Cox; Janet Hopkins; Jonathan R Pollack; James M Sikela
Journal:  Genome Res       Date:  2007-07-31       Impact factor: 9.043

5.  Duplication frequency in a population of Salmonella enterica rapidly approaches steady state with or without recombination.

Authors:  Andrew B Reams; Eric Kofoid; Michael Savageau; John R Roth
Journal:  Genetics       Date:  2010-01-18       Impact factor: 4.562

6.  Dynamics of gene duplication and transposons in microbial genomes following a sudden environmental change.

Authors:  Nicholas Chia; Nigel Goldenfeld
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-02-16

7.  Evolution of the mutation rate.

Authors:  Michael Lynch
Journal:  Trends Genet       Date:  2010-06-30       Impact factor: 11.639

8.  Tumour evolution inferred by single-cell sequencing.

Authors:  Nicholas Navin; Jude Kendall; Jennifer Troge; Peter Andrews; Linda Rodgers; Jeanne McIndoo; Kerry Cook; Asya Stepansky; Dan Levy; Diane Esposito; Lakshmi Muthuswamy; Alex Krasnitz; W Richard McCombie; James Hicks; Michael Wigler
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

Review 9.  Mechanisms of change in gene copy number.

Authors:  P J Hastings; James R Lupski; Susan M Rosenberg; Grzegorz Ira
Journal:  Nat Rev Genet       Date:  2009-08       Impact factor: 53.242

Review 10.  The phage-related chromosomal islands of Gram-positive bacteria.

Authors:  Richard P Novick; Gail E Christie; Jose R Penadés
Journal:  Nat Rev Microbiol       Date:  2010-08       Impact factor: 60.633

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