Literature DB >> 15283922

High-pressure NMR spectroscopy for characterizing folding intermediates and denatured states of proteins.

Yuji O Kamatari1, Ryo Kitahara, Hiroyuki Yamada, Shigeyuki Yokoyama, Kazuyuki Akasaka.   

Abstract

Extensive structural studies using high-pressure NMR spectroscopy have recently been carried out on proteins, which potentially contribute to our understanding of the mechanisms of protein folding. Pressure shifts the conformational equilibrium from higher to lower volume conformers. If the pressure is varied, starting from the folded native structure, in many cases we observe intermediate conformers before the onset of total unfolding. This enables the investigation of details of the structure and thermodynamic characteristics of various intermediate conformers of proteins under equilibrium conditions. We can also examine pressure effects on the structure and stability of some typical denatured states such as helical denatured, molten globule, and unfolded states. The high-pressure NMR method can also be used to investigate association/dissociation equilibria of oligomeric or aggregated proteins. Beside direct observation of kinetic intermediates upon pressure jump, NMR structural investigations of equilibrium conformers under pressure provide information about the structures of kinetic intermediates during folding/unfolding reactions.

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Year:  2004        PMID: 15283922     DOI: 10.1016/j.ymeth.2004.03.010

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  22 in total

1.  Shock Wave-Induced Damage of a Protein by Void Collapse.

Authors:  Edmond Y Lau; Max L Berkowitz; Eric Schwegler
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Self contained high pressure cell, apparatus and procedure for the preparation of encapsulated proteins dissolved in low viscosity fluids for NMR spectroscopy.

Authors:  Ronald W Peterson; A Joshua Wand
Journal:  Rev Sci Instrum       Date:  2005-09       Impact factor: 1.523

3.  Picosecond fluctuating protein energy landscape mapped by pressure temperature molecular dynamics simulation.

Authors:  Lars Meinhold; Jeremy C Smith; Akio Kitao; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-23       Impact factor: 11.205

4.  Single-molecule analysis of the rotation of F₁-ATPase under high hydrostatic pressure.

Authors:  Daichi Okuno; Masayoshi Nishiyama; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

5.  Partial alignment and measurement of residual dipolar couplings of proteins under high hydrostatic pressure.

Authors:  Yinan Fu; A Joshua Wand
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

6.  Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations.

Authors:  David J Wilton; Ryo Kitahara; Kazuyuki Akasaka; Maya J Pandya; Mike P Williamson
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

7.  How internal cavities destabilize a protein.

Authors:  Mengjun Xue; Takuro Wakamoto; Camilla Kejlberg; Yuichi Yoshimura; Tania Aaquist Nielsen; Michael Wulff Risør; Kristian Wejse Sanggaard; Ryo Kitahara; Frans A A Mulder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

8.  Coupled motion in proteins revealed by pressure perturbation.

Authors:  Yinan Fu; Vignesh Kasinath; Veronica R Moorman; Nathaniel V Nucci; Vincent J Hilser; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2012-04-10       Impact factor: 15.419

9.  Water-Protein Interactions Coupled with Protein Conformational Transition.

Authors:  Soichiro Kitazawa; Yu Aoshima; Takuro Wakamoto; Ryo Kitahara
Journal:  Biophys J       Date:  2018-08-08       Impact factor: 4.033

10.  The p53 core domain is a molten globule at low pH: functional implications of a partially unfolded structure.

Authors:  Ana Paula D Ano Bom; Monica S Freitas; Flavia S Moreira; Danielly Ferraz; Daniel Sanches; Andre M O Gomes; Ana Paula Valente; Yraima Cordeiro; Jerson L Silva
Journal:  J Biol Chem       Date:  2009-11-17       Impact factor: 5.157

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