Literature DB >> 24094404

Single-molecule analysis of the rotation of F₁-ATPase under high hydrostatic pressure.

Daichi Okuno1, Masayoshi Nishiyama, Hiroyuki Noji.   

Abstract

F1-ATPase is the water-soluble part of ATP synthase and is an ATP-driven rotary molecular motor that rotates the rotary shaft against the surrounding stator ring, hydrolyzing ATP. Although the mechanochemical coupling mechanism of F1-ATPase has been well studied, the molecular details of individual reaction steps remain unclear. In this study, we conducted a single-molecule rotation assay of F1 from thermophilic bacteria under various pressures from 0.1 to 140 MPa. Even at 140 MPa, F1 actively rotated with regular 120° steps in a counterclockwise direction, showing high conformational stability and retention of native properties. Rotational torque was also not affected. However, high hydrostatic pressure induced a distinct intervening pause at the ATP-binding angles during continuous rotation. The pause was observed under both ATP-limiting and ATP-saturating conditions, suggesting that F1 has two pressure-sensitive reactions, one of which is evidently ATP binding. The rotation assay using a mutant F1(βE190D) suggested that the other pressure-sensitive reaction occurs at the same angle at which ATP binding occurs. The activation volumes were determined from the pressure dependence of the rate constants to be +100 Å(3) and +88 Å(3) for ATP binding and the other pressure-sensitive reaction, respectively. These results are discussed in relation to recent single-molecule studies of F1 and pressure-induced protein unfolding.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24094404      PMCID: PMC3822718          DOI: 10.1016/j.bpj.2013.08.036

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  60 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

Review 2.  ATP synthase--a marvellous rotary engine of the cell.

Authors:  M Yoshida; E Muneyuki; T Hisabori
Journal:  Nat Rev Mol Cell Biol       Date:  2001-09       Impact factor: 94.444

Review 3.  Fourier transform infrared spectroscopy in high-pressure studies on proteins.

Authors:  Wojciech Dzwolak; Minoru Kato; Yoshihiro Taniguchi
Journal:  Biochim Biophys Acta       Date:  2002-03-25

Review 4.  Pressure effects on intra- and intermolecular interactions within proteins.

Authors:  Boonchai B Boonyaratanakornkit; Chan Beum Park; Douglas S Clark
Journal:  Biochim Biophys Acta       Date:  2002-03-25

5.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

6.  Osmolytes protect mitochondrial F(0)F(1)-ATPase complex against pressure inactivation.

Authors:  J Saad-Nehme; J L Silva; J R Meyer-Fernandes
Journal:  Biochim Biophys Acta       Date:  2001-03-09

7.  Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase.

Authors:  Rainer A Böckmann; Helmut Grubmüller
Journal:  Nat Struct Biol       Date:  2002-03

8.  Pressure-induced differential regulation of the two tryptophan permeases Tat1 and Tat2 by ubiquitin ligase Rsp5 and its binding proteins, Bul1 and Bul2.

Authors:  Fumiyoshi Abe; Hidetoshi Iida
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

9.  On the mechanism of ATP hydrolysis in F1-ATPase.

Authors:  Markus Dittrich; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

10.  High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded.

Authors:  Ryo Kitahara; Hiroaki Yamada; Kazuyuki Akasaka; Peter E Wright
Journal:  J Mol Biol       Date:  2002-07-05       Impact factor: 5.469

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  3 in total

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Journal:  Biophys J       Date:  2018-09-06       Impact factor: 4.033

2.  High hydrostatic pressure induces slow contraction in mouse cardiomyocytes.

Authors:  Yohei Yamaguchi; Masayoshi Nishiyama; Hiroaki Kai; Toshiyuki Kaneko; Keiko Kaihara; Gentaro Iribe; Akira Takai; Keiji Naruse; Masatoshi Morimatsu
Journal:  Biophys J       Date:  2022-07-14       Impact factor: 3.699

3.  High hydrostatic pressure induces vigorous flagellar beating in Chlamydomonas non-motile mutants lacking the central apparatus.

Authors:  Toshiki Yagi; Masayoshi Nishiyama
Journal:  Sci Rep       Date:  2020-02-06       Impact factor: 4.379

  3 in total

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