Literature DB >> 15283916

Protein folding studied by real-time NMR spectroscopy.

Markus Zeeb1, Jochen Balbach.   

Abstract

Real-time NMR spectroscopy developed to a generally applicable method to follow protein folding reactions. It combines the access to high resolution data with kinetic experiments allowing very detailed insights into the development of the protein structure during different steps of folding. The present review concentrates mainly on the progress of real-time NMR during the last 5 years. Starting from simple 1D experiments, mainly changes of the chemical shifts and line widths of the resonances have been used to analyze the different states populated during the folding reactions. Today, we have a broad spectrum of 1D, 2D, and even 3D NMR methods focusing on different characteristics of the folding polypeptide chains. More than 20 proteins have been investigated so far by these time-resolved experiments and the main results and conclusions are discussed in this report. Real-time NMR provides comprehensive contributions for joining experiment and theory within the 'new view' of protein folding.

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Year:  2004        PMID: 15283916     DOI: 10.1016/j.ymeth.2004.03.014

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  13 in total

1.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

Review 2.  Relaxation dispersion NMR spectroscopy as a tool for detailed studies of protein folding.

Authors:  Philipp Neudecker; Patrik Lundström; Lewis E Kay
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

3.  An improved ultrafast 2D NMR experiment: towards atom-resolved real-time studies of protein kinetics at multi-Hz rates.

Authors:  Maayan Gal; Thomas Kern; Paul Schanda; Lucio Frydman; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2008-11-04       Impact factor: 2.835

4.  REMD and umbrella sampling simulations to probe the energy barrier of the folding pathways of engrailed homeodomain.

Authors:  Vinod Jani; Uddhavesh B Sonavane; Rajendra Joshi
Journal:  J Mol Model       Date:  2014-05-27       Impact factor: 1.810

Review 5.  An introduction to NMR-based approaches for measuring protein dynamics.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  Biochim Biophys Acta       Date:  2010-11-06

6.  Kinetic analysis of protein aggregation monitored by real-time 2D solid-state NMR spectroscopy.

Authors:  Manuel Etzkorn; Anja Böckmann; Marc Baldus
Journal:  J Biomol NMR       Date:  2011-01-21       Impact factor: 2.835

7.  Structural enzymology of polyketide synthases.

Authors:  Shiou-Chuan Sheryl Tsai; Brian Douglas Ames
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

8.  Optimized fast mixing device for real-time NMR applications.

Authors:  Rémi Franco; Adrien Favier; Paul Schanda; Bernhard Brutscher
Journal:  J Magn Reson       Date:  2017-05-31       Impact factor: 2.229

9.  Distinguishing between cooperative and unimodal downhill protein folding.

Authors:  Fang Huang; Satoshi Sato; Timothy D Sharpe; Liming Ying; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-02       Impact factor: 11.205

Review 10.  Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

Authors:  Paul Schanda; Matthias Ernst
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

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