Literature DB >> 15252202

Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription.

Qi Meng1, Charles L Turnbough, Robert L Switzer.   

Abstract

In Bacillus subtilis and other Gram-positive bacteria, pyrimidine-mediated regulation of the pyrG gene, which encodes CTP synthetase, occurs through an attenuation mechanism involving an intrinsic transcription terminator in the pyrG leader region. Low intracellular levels of CTP prevent termination at the attenuator by a mechanism that requires the nontemplate strand sequence GGGC at the pyrG transcription initiation site (first G =+1) and the leader transcript sequence GCUCCC located at the 5' end of the terminator RNA hairpin. In this study, we demonstrate that reiterative transcription adds G residues (up to at least 10) to the 5' end of pyrG transcripts when B. subtilis cells are starved for pyrimidines but not when cells are grown with excess cytidine. Regulated repetitive addition of G residues, as well as pyrimidine-mediated pyrG regulation, requires the sequence GGGC or GGGT at the start of pyrG transcription. Mutational insertion of four extra G residues at the 5' end of the pyrG transcript (i.e., 5'-GGGGGGGC) results in constitutive pyrG expression. We propose that the incorporation of extra G residues by reiterative transcription at the wild-type promoter occurs when normal transcription elongation is stalled at position +4 by low levels of the incoming substrate, CTP, during pyrimidine limitation. The poly(G) extensions on the 5' ends of pyrG transcripts act to prevent transcription attenuation by base pairing with the sequence CUCCCUUUC located in the 5' strand of the terminator hairpin. This control mechanism is likely to operate in other Gram-positive bacteria containing similar pyrG leader sequences.

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Year:  2004        PMID: 15252202      PMCID: PMC503723          DOI: 10.1073/pnas.0403755101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Molecular recognition of pyr mRNA by the Bacillus subtilis attenuation regulatory protein PyrR.

Authors:  E R Bonner; J N D'Elia; B K Billips; R L Switzer
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

2.  Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria.

Authors:  Maumita Mandal; Benjamin Boese; Jeffrey E Barrick; Wade C Winkler; Ronald R Breaker
Journal:  Cell       Date:  2003-05-30       Impact factor: 41.582

Review 3.  Regulation of gene expression by effectors that bind to RNA.

Authors:  Frank J Grundy; Tina M Henkin
Journal:  Curr Opin Microbiol       Date:  2004-04       Impact factor: 7.934

4.  Polymerase slippage at vesicular stomatitis virus gene junctions to generate poly(A) is regulated by the upstream 3'-AUAC-5' tetranucleotide: implications for the mechanism of transcription termination.

Authors:  J N Barr; G W Wertz
Journal:  J Virol       Date:  2001-08       Impact factor: 5.103

5.  A mutant RNA polymerase reveals a kinetic mechanisms for the switch between nonproductive stuttering synthesis and productive initiation during promoter clearance.

Authors:  D J Jin
Journal:  J Biol Chem       Date:  1996-05-17       Impact factor: 5.157

6.  cis-acting sequences of Bacillus subtilis pyrG mRNA essential for regulation by antitermination.

Authors:  Qi Meng; Robert L Switzer
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

7.  Nonlinearity in genetic decoding: homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting.

Authors:  B Larsen; N M Wills; C Nelson; J F Atkins; R F Gesteland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

8.  Regulation of transcription of the Bacillus subtilis pyrG gene, encoding cytidine triphosphate synthetase.

Authors:  Q Meng; R L Switzer
Journal:  J Bacteriol       Date:  2001-10       Impact factor: 3.490

9.  CTP limitation increases expression of CTP synthase in Lactococcus lactis.

Authors:  Casper Møller Jørgensen; Karin Hammer; Jan Martinussen
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

10.  Control of gene expression by a natural metabolite-responsive ribozyme.

Authors:  Wade C Winkler; Ali Nahvi; Adam Roth; Jennifer A Collins; Ronald R Breaker
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

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  19 in total

1.  The number of G residues in the Bacillus subtilis pyrG initially transcribed region governs reiterative transcription-mediated regulation.

Authors:  Alexander K W Elsholz; Casper Møller Jørgensen; Robert L Switzer
Journal:  J Bacteriol       Date:  2006-12-08       Impact factor: 3.490

2.  Cross-regulation of the Bacillus subtilis glnRA and tnrA genes provides evidence for DNA binding site discrimination by GlnR and TnrA.

Authors:  Jill M Zalieckas; Lewis V Wray; Susan H Fisher
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

Review 3.  Regulation of Bacterial Gene Expression by Transcription Attenuation.

Authors:  Charles L Turnbough
Journal:  Microbiol Mol Biol Rev       Date:  2019-07-03       Impact factor: 11.056

4.  X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway.

Authors:  Katsuhiko S Murakami; Yeonoh Shin; Charles L Turnbough; Vadim Molodtsov
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

5.  NanoRNAs prime transcription initiation in vivo.

Authors:  Seth R Goldman; Josh S Sharp; Irina O Vvedenskaya; Jonathan Livny; Simon L Dove; Bryce E Nickels
Journal:  Mol Cell       Date:  2011-06-24       Impact factor: 17.970

Review 6.  Human body temperature and new approaches to constructing temperature-sensitive bacterial vaccines.

Authors:  Matthew D White; Catharine M Bosio; Barry N Duplantis; Francis E Nano
Journal:  Cell Mol Life Sci       Date:  2011-05-31       Impact factor: 9.261

Review 7.  Regulation of gene expression by reiterative transcription.

Authors:  Charles L Turnbough
Journal:  Curr Opin Microbiol       Date:  2011-02-19       Impact factor: 7.934

8.  Heavy involvement of stringent transcription control depending on the adenine or guanine species of the transcription initiation site in glucose and pyruvate metabolism in Bacillus subtilis.

Authors:  Shigeo Tojo; Kanako Kumamoto; Kazutake Hirooka; Yasutaro Fujita
Journal:  J Bacteriol       Date:  2010-01-15       Impact factor: 3.490

Review 9.  Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors.

Authors:  Charles L Turnbough; Robert L Switzer
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

Review 10.  Monitoring abortive initiation.

Authors:  Lilian M Hsu
Journal:  Methods       Date:  2008-10-21       Impact factor: 3.608

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