Literature DB >> 15063848

Regulation of gene expression by effectors that bind to RNA.

Frank J Grundy1, Tina M Henkin.   

Abstract

Recent studies have revealed several genetic systems in bacteria that use complex RNA structural elements to monitor regulatory signals and control expression of downstream genes. These include RNA thermosensors, in which an inhibitory structure melts at high temperature, and systems where binding of small RNAs or cellular metabolites modulates the structure of the RNA. The remarkable feature of these systems is the ability of the regulatory RNA elements to specifically sense the regulatory signal, without accessory components, and convey that information to the gene expression machinery via a structural change in the nascent RNA.

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Year:  2004        PMID: 15063848     DOI: 10.1016/j.mib.2004.02.013

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  35 in total

1.  Basis for ligand discrimination between ON and OFF state riboswitch conformations: the case of the SAM-I riboswitch.

Authors:  Vamsi Krishna Boyapati; Wei Huang; Jessica Spedale; Fareed Aboul-Ela
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

Review 2.  Taming free energy landscapes with RNA chaperones.

Authors:  Sarah A Woodson
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

3.  An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs.

Authors:  Jonas Noeske; Christian Richter; Marc A Grundl; Hamid R Nasiri; Harald Schwalbe; Jens Wöhnert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-21       Impact factor: 11.205

4.  Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression.

Authors:  Brooke A McDaniel; Frank J Grundy; Vineeta P Kurlekar; Jerneja Tomsic; Tina M Henkin
Journal:  J Bacteriol       Date:  2006-05       Impact factor: 3.490

5.  tRNA regulation of gene expression: interactions of an mRNA 5'-UTR with a regulatory tRNA.

Authors:  Audrey R Nelson; Tina M Henkin; Paul F Agris
Journal:  RNA       Date:  2006-06-01       Impact factor: 4.942

6.  S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA.

Authors:  Ryan T Fuchs; Frank J Grundy; Tina M Henkin
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-09       Impact factor: 11.205

7.  A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control.

Authors:  Simon Blouin; Daniel A Lafontaine
Journal:  RNA       Date:  2007-06-21       Impact factor: 4.942

8.  Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria.

Authors:  Alexander V Seliverstov; Harald Putzer; Mikhail S Gelfand; Vassily A Lyubetsky
Journal:  BMC Microbiol       Date:  2005-10-03       Impact factor: 3.605

9.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription.

Authors:  Qi Meng; Charles L Turnbough; Robert L Switzer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-13       Impact factor: 11.205

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