Literature DB >> 15246663

Protein thermostability: structure-based difference of amino acid between thermophilic and mesophilic proteins.

Seung Pil Pack1, Young Je Yoo.   

Abstract

Structural distributions of each amino acid were compared between 20 pairs of thermophilic and mesophilic proteins to obtain thermostable factors. Five kinds of residual structure states such as fully-exposed, exposed, partially exposed (or partially buried), buried, well-buried states were considered for analyzing the structural patterns of amino acids. The statistical tests revealed that lower frequency in partially exposed state of SER, lower frequency in exposed state and higher frequency in well-buried state of ALA, higher frequency in buried state of GLU, higher frequency in exposed state of ARG, etc. could be critical factors related with protein thermostability.

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Year:  2004        PMID: 15246663     DOI: 10.1016/j.jbiotec.2004.01.018

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  30 in total

1.  Thermostabilization of Bacillus subtilis lipase A by minimizing the structural deformation caused by packing enhancement.

Authors:  Hong Seung Yun; Hyun June Park; Jeong Chan Joo; Young Je Yoo
Journal:  J Ind Microbiol Biotechnol       Date:  2013-09-05       Impact factor: 3.346

2.  Compositional and structural features related to thermal stability in the archaea SRP19 and SRP54 signal recognition particle proteins.

Authors:  Francisco Miralles
Journal:  J Mol Evol       Date:  2011-04-20       Impact factor: 2.395

Review 3.  Multifactorial level of extremostability of proteins: can they be exploited for protein engineering?

Authors:  Debamitra Chakravorty; Mohd Faheem Khan; Sanjukta Patra
Journal:  Extremophiles       Date:  2017-03-10       Impact factor: 2.395

4.  Structural insights into the epimerization of β-1,4-linked oligosaccharides catalyzed by cellobiose 2-epimerase, the sole enzyme epimerizing non-anomeric hydroxyl groups of unmodified sugars.

Authors:  Takaaki Fujiwara; Wataru Saburi; Hirokazu Matsui; Haruhide Mori; Min Yao
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

5.  Crystal structure of fuculose aldolase from the Antarctic psychrophilic yeast Glaciozyma antarctica PI12.

Authors:  Nardiah Rizwana Jaafar; Dene Littler; Travis Beddoe; Jamie Rossjohn; Rosli Md Illias; Nor Muhammad Mahadi; Mukram Mohamed Mackeen; Abdul Munir Abdul Murad; Farah Diba Abu Bakar
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-10-27       Impact factor: 1.056

6.  Genomic and proteomic adaptations to growth at high temperature.

Authors:  Donal A Hickey; Gregory A C Singer
Journal:  Genome Biol       Date:  2004-09-30       Impact factor: 13.583

Review 7.  Bacterial laccases: promising biological green tools for industrial applications.

Authors:  Zheng-Bing Guan; Quan Luo; Hao-Ran Wang; Yu Chen; Xiang-Ru Liao
Journal:  Cell Mol Life Sci       Date:  2018-07-25       Impact factor: 9.261

8.  Niche specific amino acid features within the core genes of the genus Shewanella.

Authors:  Rachana Banerjee; Subhasis Mukhopadhyay
Journal:  Bioinformation       Date:  2012-10-01

9.  Structure-dependent relationships between growth temperature of prokaryotes and the amino acid frequency in their proteins.

Authors:  Gisle Saelensminde; Øyvind Halskau; Ronny Helland; Nils-Peder Willassen; Inge Jonassen
Journal:  Extremophiles       Date:  2007-04-12       Impact factor: 3.035

10.  Comparative analysis of zinc finger proteins involved in plant disease resistance.

Authors:  Santosh Kumar Gupta; Amit Kumar Rai; Shamsher Singh Kanwar; Tilak R Sharma
Journal:  PLoS One       Date:  2012-08-15       Impact factor: 3.240

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