Literature DB >> 15461805

Genomic and proteomic adaptations to growth at high temperature.

Donal A Hickey1, Gregory A C Singer.   

Abstract

Most positively selected mutations cause changes in metabolism, resulting in a better-adapted phenotype. But as well as acting on the information content of genes, natural selection may also act directly on nucleic acid and protein molecules. We review the evidence for direct temperature-dependent natural selection acting on genomes, transcriptomes and proteomes.

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Year:  2004        PMID： 15461805      PMCID： PMC545586          DOI： 10.1186/gb-2004-5-10-117

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  61 in total

1.  Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium.

Authors:  T Kawashima; N Amano; H Koike; S Makino; S Higuchi; Y Kawashima-Ohya; K Watanabe; M Yamazaki; K Kanehori; T Kawamoto; T Nunoshiba; Y Yamamoto; H Aramaki; K Makino; M Suzuki
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Identification of thermophilic species by the amino acid compositions deduced from their genomes.

Authors:  D P Kreil; C A Ouzounis
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

Review 3.  Isochores and the evolutionary genomics of vertebrates.

Authors:  G Bernardi
Journal:  Gene       Date:  2000-01-04       Impact factor: 3.688

4.  The thermal denaturation of DNA: average length and composition of denatured areas.

Authors:  A P Russell; D S Holleman
Journal:  Nucleic Acids Res       Date:  1974-08       Impact factor: 16.971

5.  Protein-length distributions for the three domains of life.

Authors:  J Zhang
Journal:  Trends Genet       Date:  2000-03       Impact factor: 11.639

Review 6.  Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability.

Authors:  C Vieille; G J Zeikus
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

7.  Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

Authors:  G A Singer; D A Hickey
Journal:  Mol Biol Evol       Date:  2000-11       Impact factor: 16.240

8.  A story: unpaired adenosine bases in ribosomal RNAs.

Authors:  R R Gutell; J J Cannone; Z Shang; Y Du; M J Serra
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

9.  High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes.

Authors:  L D Hurst; A R Merchant
Journal:  Proc Biol Sci       Date:  2001-03-07       Impact factor: 5.349

10.  Mutational bias affects protein evolution in flowering plants.

Authors:  Huai-chun Wang; Gregory A C Singer; Donal A Hickey
Journal:  Mol Biol Evol       Date:  2003-10-31       Impact factor: 16.240
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  40 in total

1.  How a Genetically Stable Extremophile Evolves: Modes of Genome Diversification in the Archaeon Sulfolobus acidocaldarius.

Authors:  Dominic Mao; Dennis W Grogan
Journal:  J Bacteriol       Date:  2017-08-08       Impact factor: 3.490

2.  Variation among species in proteomic sulphur content is related to environmental conditions.

Authors:  Jason G Bragg; Dominique Thomas; Peggy Baudouin-Cornu
Journal:  Proc Biol Sci       Date:  2006-05-22       Impact factor: 5.349

3.  Compositional and structural features related to thermal stability in the archaea SRP19 and SRP54 signal recognition particle proteins.

Authors:  Francisco Miralles
Journal:  J Mol Evol       Date:  2011-04-20       Impact factor: 2.395

4.  Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes.

Authors:  Luke R Thompson; Mohamed F Haroon; Ahmed A Shibl; Matt J Cahill; David K Ngugi; Gareth J Williams; James T Morton; Rob Knight; Kelly D Goodwin; Ulrich Stingl
Journal:  Appl Environ Microbiol       Date:  2019-06-17       Impact factor: 4.792

5.  Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis.

Authors:  F Mandelli; M B Couger; D A A Paixão; C B Machado; C M Carnielli; J A Aricetti; I Polikarpov; R Prade; C Caldana; A F Paes Leme; A Z Mercadante; D M Riaño-Pachón; Fabio Marcio Squina
Journal:  Extremophiles       Date:  2017-05-12       Impact factor: 2.395

6.  Elevated temperature alters proteomic responses of individual organisms within a biofilm community.

Authors:  Annika C Mosier; Zhou Li; Brian C Thomas; Robert L Hettich; Chongle Pan; Jillian F Banfield
Journal:  ISME J       Date:  2014-07-22       Impact factor: 10.302

7.  Revisiting the Relationships Between Genomic G + C Content, RNA Secondary Structures, and Optimal Growth Temperature.

Authors:  Michelle M Meyer
Journal:  J Mol Evol       Date:  2020-11-20       Impact factor: 2.395

8.  Simple sequence repeat insertion induced stability and potential 'gain of function' in the proteins of extremophilic bacteria.

Authors:  Sahil Mahfooz; Gauri Shankar; Jitendra Narayan; Pallavi Singh; Yusuf Akhter
Journal:  Extremophiles       Date:  2022-05-05       Impact factor: 2.395

Review 9.  Microbial adaptation to different environmental conditions: molecular perspective of evolved genetic and cellular systems.

Authors:  Atif Khurshid Wani; Nahid Akhtar; Farooq Sher; Acacio Aparecido Navarrete; Juliana Heloisa Pinê Américo-Pinheiro
Journal:  Arch Microbiol       Date:  2022-01-19       Impact factor: 2.552

10.  Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

Authors:  Konstantinos Mavromatis; Natalia Ivanova; Iain Anderson; Athanasios Lykidis; Sean D Hooper; Hui Sun; Victor Kunin; Alla Lapidus; Philip Hugenholtz; Bharat Patel; Nikos C Kyrpides
Journal:  PLoS One       Date:  2009-01-15       Impact factor: 3.240
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