Literature DB >> 15244846

Dynamics of biological molecules irradiated by short x-ray pulses.

Stefan P Hau-Riege1, Richard A London, Abraham Szoke.   

Abstract

Very short and intense x-ray pulses can be used for diffraction imaging of single biological molecules. Inevitably, x-ray absorption initiates damage that degrades the molecule's image. This paper presents a continuum model of the physics that leads to damage when a small particle absorbs a large x-ray dose. The main processes are found to be ionization and Coulomb-force driven atomic motion. Trapping of electrons, Debye shielding, and nonuniform collisional ionization all have a significant effect on the overall damage kinetics.

Entities:  

Mesh：

Year:  2004        PMID： 15244846     DOI： 10.1103/PhysRevE.69.051906

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN： 1539-3755


  16 in total

1.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

Review 2.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

3.  Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements.

Authors:  Anton Barty; Carl Caleman; Andrew Aquila; Nicusor Timneanu; Lukas Lomb; Thomas A White; Jakob Andreasson; David Arnlund; Saša Bajt; Thomas R M Barends; Miriam Barthelmess; Michael J Bogan; Christoph Bostedt; John D Bozek; Ryan Coffee; Nicola Coppola; Jan Davidsson; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Veit Elser; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Petra Fromme; Heinz Graafsma; Lars Gumprecht; Janos Hajdu; Christina Y Hampton; Robert Hartmann; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; Mark S Hunter; Linda Johansson; Stephan Kassemeyer; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Erik Malmerberg; Stefano Marchesini; Andrew V Martin; Karol Nass; Richard Neutze; Christian Reich; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Howard Scott; Ilme Schlichting; Joachim Schulz; M Marvin Seibert; Robert L Shoeman; Raymond G Sierra; Heike Soltau; John C H Spence; Francesco Stellato; Stephan Stern; Lothar Strüder; Joachim Ullrich; X Wang; Georg Weidenspointner; Uwe Weierstall; Cornelia B Wunderer; Henry N Chapman
Journal:  Nat Photonics       Date:  2012       Impact factor: 38.771

4.  Femtosecond X-ray protein nanocrystallography.

Authors:  Henry N Chapman; Petra Fromme; Anton Barty; Thomas A White; Richard A Kirian; Andrew Aquila; Mark S Hunter; Joachim Schulz; Daniel P DePonte; Uwe Weierstall; R Bruce Doak; Filipe R N C Maia; Andrew V Martin; Ilme Schlichting; Lukas Lomb; Nicola Coppola; Robert L Shoeman; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Lutz Foucar; Nils Kimmel; Georg Weidenspointner; Peter Holl; Mengning Liang; Miriam Barthelmess; Carl Caleman; Sébastien Boutet; Michael J Bogan; Jacek Krzywinski; Christoph Bostedt; Saša Bajt; Lars Gumprecht; Benedikt Rudek; Benjamin Erk; Carlo Schmidt; André Hömke; Christian Reich; Daniel Pietschner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Marc Messerschmidt; John D Bozek; Stefan P Hau-Riege; Matthias Frank; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Garth J Williams; Janos Hajdu; Nicusor Timneanu; M Marvin Seibert; Jakob Andreasson; Andrea Rocker; Olof Jönsson; Martin Svenda; Stephan Stern; Karol Nass; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Kevin E Schmidt; Xiaoyu Wang; Ingo Grotjohann; James M Holton; Thomas R M Barends; Richard Neutze; Stefano Marchesini; Raimund Fromme; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Inger Andersson; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; John C H Spence
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

Review 5.  Emerging opportunities in structural biology with X-ray free-electron lasers.

Authors:  Ilme Schlichting; Jianwei Miao
Journal:  Curr Opin Struct Biol       Date:  2012-08-22       Impact factor: 6.809

Review 6.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

7.  Serial macromolecular crystallography at ALBA Synchrotron Light Source.

Authors:  Jose M Martin-Garcia; Sabine Botha; Hao Hu; Rebecca Jernigan; Albert Castellví; Stella Lisova; Fernando Gil; Barbara Calisto; Isidro Crespo; Shatabdi Roy-Chowdhury; Alice Grieco; Gihan Ketawala; Uwe Weierstall; John Spence; Petra Fromme; Nadia Zatsepin; Dirk Roeland Boer; Xavi Carpena
Journal:  J Synchrotron Radiat       Date:  2022-04-04       Impact factor: 2.557

8.  In vivo X-ray elemental imaging of single cell model organisms manipulated by laser-based optical tweezers.

Authors:  Eva Vergucht; Toon Brans; Filip Beunis; Jan Garrevoet; Maarten De Rijcke; Stephen Bauters; David Deruytter; Michiel Vandegehuchte; Ine Van Nieuwenhove; Colin Janssen; Manfred Burghammer; Laszlo Vincze
Journal:  Sci Rep       Date:  2015-03-12       Impact factor: 4.379

9.  Single-molecule imaging with longer X-ray laser pulses.

Authors:  Andrew V Martin; Justine K Corso; Carl Caleman; Nicusor Timneanu; Harry M Quiney
Journal:  IUCrJ       Date:  2015-10-21       Impact factor: 4.769

10.  Diffraction before destruction.

Authors:  Henry N Chapman; Carl Caleman; Nicusor Timneanu
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237
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