Literature DB >> 15234365

Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 2. Preparation, dissociations, and energetics of 3-hydroxyoxolan-3-yl radical and cation.

Shetty Vivekananda1, Martin Sadílek, Xiaohong Chen, Luke E Adams, Frantisek Turecek.   

Abstract

The title radical (1) is generated in the gas-phase by collisional neutralization of carbonyl-protonated oxolan-3-one. A 1.5% fraction of 1 does not dissociate and is detected following reionization as survivor ions. The major dissociation of 1 (approximately 56%) occurs as loss of the hydroxyl H atom forming oxolan-3-one (2). The competing ring cleavages by O[bond]C-2 and C-4[bond]C-5 bond dissociations combined account for approximately 42% of dissociation and result in the formation of formaldehyde and 2-hydroxyallyl radical. Additional ring-cleavage dissociations of 1 resulting in the formation of C(2)H(3)O and C(2)H(4)O cannot be explained as occurring competitively on the doublet ground (X) electronic state of 1, but are energetically accessible from the A and higher electronic states accessed by vertical electron transfer. Exothermic protonation of 2 also produces 3-oxo-(1H)-oxolanium cation (3(+)) which upon collisional neutralization gives hypervalent 3-oxo-(1H)-oxolanium radical (3). The latter dissociates spontaneously by ring opening and expulsion of hydroxy radical. Experiment and calculations suggest that carbohydrate radicals incorporating the 3-hydroxyoxolan-3-yl motif will prefer ring-cleavage dissociations at low internal energies or upon photoexcitation by absorbing light at approximately 590 and approximately 400 nm.

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Year:  2004        PMID: 15234365     DOI: 10.1016/j.jasms.2004.04.004

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  14 in total

1.  Oxidative Nucleobase Modifications Leading to Strand Scission.

Authors:  Cynthia J. Burrows; James G. Muller
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

2.  Selective abstraction of 2H from C-1' of the C residue in AGC.ICT by the radical center at C-2 of activated neocarzinostatin chromophore: structure of the drug/DNA complex responsible for bistranded lesion formation.

Authors:  S M Meschwitz; R G Schultz; G W Ashley; I H Goldberg
Journal:  Biochemistry       Date:  1992-09-29       Impact factor: 3.162

3.  Novel tandem quadrupole-acceleration-deceleration mass spectrometer for neutralization-reionization studies.

Authors:  F Turecek; M Gu; S A Shaffer
Journal:  J Am Soc Mass Spectrom       Date:  1992-07       Impact factor: 3.109

4.  Kinetics and Mechanism of the Oxidation of Sugars and Nucleotides by Oxoruthenium(IV): Model Studies for Predicting Cleavage Patterns in Polymeric DNA and RNA.

Authors:  Gregory A Neyhart; Chien-Chung Cheng; H Holden Thorp
Journal:  J Am Chem Soc       Date:  1995-02-01       Impact factor: 15.419

5.  Calicheamicin gamma 1I and DNA: molecular recognition process responsible for site-specificity.

Authors:  N Zein; M Poncin; R Nilakantan; G A Ellestad
Journal:  Science       Date:  1989-05-12       Impact factor: 47.728

6.  Lactone enol cation-radicals: gas-phase generation, structure, energetics, and reactivity of the ionized enol of butane-4-lactone.

Authors:  Frantisek Turecek; Shetty Vivekananda; Martin Sadílek; Miroslav Polásek
Journal:  J Mass Spectrom       Date:  2002-08       Impact factor: 1.982

7.  Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 1. Preparation, dissociations, and energetics of 2-hydroxyoxolan-2-yl radical, neutral isomers, and cations.

Authors:  Shetty Vivekananda; Martin Sadílek; Xiaohong Chen; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

8.  Mechanism and energetics of intramolecular hydrogen transfer in amide and peptide radicals and cation-radicals.

Authors:  Frantisek Turecek; Erik A Syrstad
Journal:  J Am Chem Soc       Date:  2003-03-19       Impact factor: 15.419

9.  Identification of 2-deoxyribonolactone at the site of neocarzinostatin-induced cytosine release in the sequence d(AGC).

Authors:  L S Kappen; I H Goldberg
Journal:  Biochemistry       Date:  1989-02-07       Impact factor: 3.162

10.  Protonated ethanol and its neutral counterparts.

Authors:  C Wesdemiotis; A Fura; F W McLafferty
Journal:  J Am Soc Mass Spectrom       Date:  1991-12       Impact factor: 3.109

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  1 in total

1.  Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 1. Preparation, dissociations, and energetics of 2-hydroxyoxolan-2-yl radical, neutral isomers, and cations.

Authors:  Shetty Vivekananda; Martin Sadílek; Xiaohong Chen; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

  1 in total

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