Literature DB >> 15229645

The replicon revisited: an old model learns new tricks in metazoan chromosomes.

Mirit I Aladjem1, Ellen Fanning.   

Abstract

The origins of DNA replication were proposed in the replicon model to be specified genetically by replicator elements that coordinate the initiation of DNA synthesis with gene expression and cell growth. Recent studies have identified DNA sequences in mammalian cells that fulfil the genetic criteria for replicators and are beginning to uncover the sequence requirements for the initiation of DNA replication. Mammalian replicators are com- posed of non-redundant modules that cooperate to direct initiation to specific chromosomal sites. Conversely, replicators do not show strong sequence similarity, and their ability to initiate replication depends on the chromosomal context and epigenetic factors, as well as their primary sequence. Here, we review the properties of metazoan replicators, and discuss the genetic and epigenetic factors that determine where and when DNA replication is initiated.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15229645      PMCID: PMC1299096          DOI: 10.1038/sj.embor.7400185

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  53 in total

1.  An episomal mammalian replicon: sequence-independent binding of the origin recognition complex.

Authors:  Daniel Schaarschmidt; Jens Baltin; Isa M Stehle; Hans J Lipps; Rolf Knippers
Journal:  EMBO J       Date:  2003-12-11       Impact factor: 11.598

2.  Nuclear reorganization of mammalian DNA synthesis prior to cell cycle exit.

Authors:  David A Barbie; Brian A Kudlow; Richard Frock; Jiyong Zhao; Brett R Johnson; Nicholas Dyson; Ed Harlow; Brian K Kennedy
Journal:  Mol Cell Biol       Date:  2004-01       Impact factor: 4.272

3.  Modular structure of the human lamin B2 replicator.

Authors:  Sónia Paixão; Ivan N Colaluca; Matthieu Cubells; Fiorenzo A Peverali; Annarita Destro; Sara Giadrossi; Mauro Giacca; Arturo Falaschi; Silvano Riva; Giuseppe Biamonti
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

4.  On the mechanism of DNA replication in mammalian chromosomes.

Authors:  J A Huberman; A D Riggs
Journal:  J Mol Biol       Date:  1968-03-14       Impact factor: 5.469

5.  Participation of the human beta-globin locus control region in initiation of DNA replication.

Authors:  M I Aladjem; M Groudine; L L Brody; E S Dieken; R E Fournier; G M Wahl; E M Epner
Journal:  Science       Date:  1995-11-03       Impact factor: 47.728

Review 6.  Origins of DNA replication in metazoan chromosomes.

Authors:  M L DePamphilis
Journal:  J Biol Chem       Date:  1993-01-05       Impact factor: 5.157

7.  The promoter of the Chinese hamster ovary dihydrofolate reductase gene regulates the activity of the local origin and helps define its boundaries.

Authors:  Swati Saha; Yujie Shan; Larry D Mesner; Joyce L Hamlin
Journal:  Genes Dev       Date:  2004-02-20       Impact factor: 11.361

8.  Sequence requirements for function of the Drosophila chorion gene locus ACE3 replicator and ori-beta origin elements.

Authors:  Hongjun Zhang; John Tower
Journal:  Development       Date:  2004-05       Impact factor: 6.868

9.  Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin.

Authors:  Amy L Altman; Ellen Fanning
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

10.  The human beta-globin replication initiation region consists of two modular independent replicators.

Authors:  Lixin Wang; Chii-Mei Lin; Sarah Brooks; Dan Cimbora; Mark Groudine; Mirit I Aladjem
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

View more
  35 in total

1.  Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription.

Authors:  Larry D Mesner; Veena Valsakumar; Neerja Karnani; Anindya Dutta; Joyce L Hamlin; Stefan Bekiranov
Journal:  Genome Res       Date:  2010-12-20       Impact factor: 9.043

2.  HoxB domain induction silences DNA replication origins in the locus and specifies a single origin at its boundary.

Authors:  Damien Grégoire; Konstantin Brodolin; Marcel Méchali
Journal:  EMBO Rep       Date:  2006-07-14       Impact factor: 8.807

3.  Identification of new human origins of DNA replication by an origin-trapping assay.

Authors:  Jeannine Gerhardt; Samira Jafar; Mark-Peter Spindler; Elisabeth Ott; Aloys Schepers
Journal:  Mol Cell Biol       Date:  2006-09-05       Impact factor: 4.272

4.  Binding of AlF-C, an Orc1-binding transcriptional regulator, enhances replicator activity of the rat aldolase B origin.

Authors:  Hiroyuki Minami; Junko Takahashi; Asami Suto; Yasushi Saitoh; Ken-ichi Tsutsumi
Journal:  Mol Cell Biol       Date:  2006-09-18       Impact factor: 4.272

Review 5.  The elusive determinants of replication origins.

Authors:  Silvia Costa; J Julian Blow
Journal:  EMBO Rep       Date:  2007-04       Impact factor: 8.807

6.  Cdc6 ATPase activity regulates ORC x Cdc6 stability and the selection of specific DNA sequences as origins of DNA replication.

Authors:  Christian Speck; Bruce Stillman
Journal:  J Biol Chem       Date:  2007-02-21       Impact factor: 5.157

7.  Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells.

Authors:  Chiara Conti; Barbara Saccà; John Herrick; Claude Lalou; Yves Pommier; Aaron Bensimon
Journal:  Mol Biol Cell       Date:  2007-05-23       Impact factor: 4.138

8.  Genome-wide depletion of replication initiation events in highly transcribed regions.

Authors:  Melvenia M Martin; Michael Ryan; RyangGuk Kim; Anna L Zakas; Haiqing Fu; Chii Mei Lin; William C Reinhold; Sean R Davis; Sven Bilke; Hongfang Liu; James H Doroshow; Mark A Reimers; Manuel S Valenzuela; Yves Pommier; Paul S Meltzer; Mirit I Aladjem
Journal:  Genome Res       Date:  2011-08-03       Impact factor: 9.043

Review 9.  Nucleosomes in the neighborhood: new roles for chromatin modifications in replication origin control.

Authors:  Elizabeth Suzanne Dorn; Jeanette Gowen Cook
Journal:  Epigenetics       Date:  2011-05-01       Impact factor: 4.528

10.  Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.

Authors:  Heather K MacAlpine; Raluca Gordân; Sara K Powell; Alexander J Hartemink; David M MacAlpine
Journal:  Genome Res       Date:  2009-12-07       Impact factor: 9.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.