Literature DB >> 15221478

Acetyl-coenzyme A synthase: the case for a Ni(p)(0)-based mechanism of catalysis.

Paul A Lindahl1.   

Abstract

Acetyl-CoA synthase (also known as carbon monoxide dehydrogenase) is a bifunctional Ni-Fe-S-containing enzyme that catalyzes the reversible reduction of CO(2) to CO and the synthesis of acetyl-coenzyme A from CO, CoA, and a methyl group donated by a corrinoid iron-sulfur protein. The active site for the latter reaction, called the A-cluster, consists of an Fe(4)S(4) cubane bridged to the proximal Ni site (Ni(p)), which is bridged in turn to the so-called distal Ni site. In this review, evidence is presented that Ni(p) achieves a zero-valent state at low potentials and during catalysis. Ni(p) appears to be the metal to which CO and methyl groups bind and then react to form an acetyl-Ni(p) intermediate. Methyl group binding requires reductive activation, where two electrons reduce some site on the A-cluster. The coordination environment of the distal Ni suggests that it could not be stabilized in redox states lower than 2+. The rate at which the [Fe(4)S(4)](2+) cubane is reduced is far slower than that at which reductive activation occurs, suggesting that the cubane is not the site of reduction. An intriguing possibility is that Ni(p)(2+) might be reduced to the zero-valent state. Reinforcing this idea are Ni-organometallic complexes in which the Ni exhibits analogous reactivity properties when reduced to the zero-valent state. A zero-valent Ni stabilized exclusively with biological ligands would be remarkable and unprecedented in biology.

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Year:  2004        PMID: 15221478     DOI: 10.1007/s00775-004-0564-x

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  28 in total

1.  Nickel in subunit beta of the acetyl-CoA decarbonylase/synthase multienzyme complex in methanogens. Catalytic properties and evidence for a binuclear Ni-Ni site.

Authors:  Simonida Gencic; David A Grahame
Journal:  J Biol Chem       Date:  2002-12-02       Impact factor: 5.157

2.  MolMovDB: analysis and visualization of conformational change and structural flexibility.

Authors:  Nathaniel Echols; Duncan Milburn; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Influence of Sulfur Metalation on the Accessibility of the Ni(II/I) Couple in [N,N'-Bis(2-mercaptoethyl)-1,5-diazacyclooctanato]nickel(II): Insight into the Redox Properties of [NiFe]-Hydrogenase.

Authors:  Ghezai Musie; Patrick J. Farmer; Thawatchai Tuntulani; Joseph H. Reibenspies; Marcetta Y. Darensbourg
Journal:  Inorg Chem       Date:  1996-04-10       Impact factor: 5.165

4.  Controlled potential enzymology of methyl transfer reactions involved in acetyl-CoA synthesis by CO dehydrogenase and the corrinoid/iron-sulfur protein from Clostridium thermoaceticum.

Authors:  W P Lu; S R Harder; S W Ragsdale
Journal:  J Biol Chem       Date:  1990-02-25       Impact factor: 5.157

5.  The evolution of acetyl-CoA synthase.

Authors:  P A Lindahl; B Chang
Journal:  Orig Life Evol Biosph       Date:  2001 Aug-Oct       Impact factor: 1.950

6.  Active acetyl-CoA synthase from Clostridium thermoaceticum obtained by cloning and heterologous expression of acsAB in Escherichia coli.

Authors:  H K Loke; G N Bennett; P A Lindahl
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

7.  Genetic construction of truncated and chimeric metalloproteins derived from the alpha subunit of acetyl-CoA synthase from Clostridium thermoaceticum.

Authors:  Huay-Keng Loke; Xiangshi Tan; Paul A Lindahl
Journal:  J Am Chem Soc       Date:  2002-07-24       Impact factor: 15.419

8.  A methylnickel intermediate in a bimetallic mechanism of acetyl-coenzyme A synthesis by anaerobic bacteria.

Authors:  M Kumar; D Qiu; T G Spiro; S W Ragsdale
Journal:  Science       Date:  1995-10-27       Impact factor: 47.728

9.  Mössbauer study of CO dehydrogenase from Clostridium thermoaceticum.

Authors:  P A Lindahl; S W Ragsdale; E Münck
Journal:  J Biol Chem       Date:  1990-03-05       Impact factor: 5.157

10.  Computational studies on the A cluster of acetyl-coenzyme A synthase: geometric and electronic properties of the NiFeC species and mechanistic implications.

Authors:  Ralph P Schenker; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

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  26 in total

1.  Kinetics of CO insertion and acetyl group transfer steps, and a model of the acetyl-CoA synthase catalytic mechanism.

Authors:  Xiangshi Tan; Ivan V Surovtsev; Paul A Lindahl
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

2.  Nickel-dependent oligomerization of the alpha subunit of acetyl-coenzyme a synthase/carbon monoxide dehydrogenase.

Authors:  Xiangshi Tan; Ioannis Kagiampakis; Ivan V Surovtsev; Borries Demeler; Paul A Lindahl
Journal:  Biochemistry       Date:  2007-09-22       Impact factor: 3.162

3.  Pulse-chase studies of the synthesis of acetyl-CoA by carbon monoxide dehydrogenase/acetyl-CoA synthase: evidence for a random mechanism of methyl and carbonyl addition.

Authors:  Javier Seravalli; Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2008-01-18       Impact factor: 5.157

Review 4.  Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation.

Authors:  Stephen W Ragsdale; Elizabeth Pierce
Journal:  Biochim Biophys Acta       Date:  2008-08-27

5.  Tunnel mutagenesis and Ni-dependent reduction and methylation of the alpha subunit of acetyl coenzyme A synthase/carbon monoxide dehydrogenase.

Authors:  Xiangshi Tan; Paul A Lindahl
Journal:  J Biol Inorg Chem       Date:  2008-03-26       Impact factor: 3.358

6.  Binuclear complexes containing a methylnickel moiety: relevance to organonickel intermediates in acetyl coenzyme A synthase catalysis.

Authors:  William G Dougherty; Krishnan Rangan; Molly J O'Hagan; Glenn P A Yap; Charles G Riordan
Journal:  J Am Chem Soc       Date:  2008-09-19       Impact factor: 15.419

Review 7.  Catalysis of methyl group transfers involving tetrahydrofolate and B(12).

Authors:  Stephen W Ragsdale
Journal:  Vitam Horm       Date:  2008       Impact factor: 3.421

8.  X-ray Absorption Spectroscopy Reveals an Organometallic Ni-C Bond in the CO-Treated Form of Acetyl-CoA Synthase.

Authors:  Mehmet Can; Logan J Giles; Stephen W Ragsdale; Ritimukta Sarangi
Journal:  Biochemistry       Date:  2017-02-23       Impact factor: 3.162

Review 9.  Nickel and the carbon cycle.

Authors:  Stephen W Ragsdale
Journal:  J Inorg Biochem       Date:  2007-07-21       Impact factor: 4.155

10.  Mossbauer evidence for an exchange-coupled {[Fe4S4]1+ Nip1+} A-cluster in isolated alpha subunits of acetyl-coenzyme A synthase/carbon monoxide dehydrogenase.

Authors:  Xiangshi Tan; Marlène Martinho; Audria Stubna; Paul A Lindahl; Eckard Münck
Journal:  J Am Chem Soc       Date:  2008-05-07       Impact factor: 15.419

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