Literature DB >> 15218353

Searching for optimal sensory signals: iterative stimulus reconstruction in closed-loop experiments.

Fredrik Edin1, Christian K Machens, Hartmut Schütze, Andreas V M Herz.   

Abstract

Shaped by evolutionary processes, sensory systems often represent behaviorally relevant stimuli with higher fidelity than other stimuli. The stimulus dependence of neural reliability could therefore provide an important clue in a search for relevant sensory signals. We explore this relation and introduce a novel iterative algorithm that allows one to find stimuli that are reliably represented by the sensory system under study. To assess the quality of a neural representation, we use stimulus reconstruction methods. The algorithm starts with the presentation of an initial stimulus (e.g. white noise). The evoked spike train is recorded and used to reconstruct the stimulus online. Within a closed-loop setup, this reconstruction is then played back to the sensory system. Iterating this procedure, the newly generated stimuli can be better and better reconstructed. We demonstrate the feasibility of this method by applying it to auditory receptor neurons in locusts. Our data show that the optimal stimuli often exhibit pronounced sub-threshold periods that are interrupted by short, yet intense pulses. Similar results are obtained for simple model neurons and suggest that these stimuli are encoded with high reliability by a large class of neurons. Copyright 2004 Kluwer Academic Plublishers

Mesh:

Year:  2004        PMID: 15218353     DOI: 10.1023/B:JCNS.0000023868.18446.a2

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  10 in total

1.  Reconstruction of natural scenes from ensemble responses in the lateral geniculate nucleus.

Authors:  G B Stanley; F F Li; Y Dan
Journal:  J Neurosci       Date:  1999-09-15       Impact factor: 6.167

2.  Song pattern recognition in the grasshopper Chorthippus biguttulus: the mechanism of syllable onset and offset detection.

Authors:  R Balakrishnan; D von Helversen; O von Helversen
Journal:  J Comp Physiol A       Date:  2001-05       Impact factor: 1.836

3.  Representation of acoustic communication signals by insect auditory receptor neurons.

Authors:  C K Machens; M B Stemmler; P Prinz; R Krahe; B Ronacher; A V Herz
Journal:  J Neurosci       Date:  2001-05-01       Impact factor: 6.167

4.  Reading a neural code.

Authors:  W Bialek; F Rieke; R R de Ruyter van Steveninck; D Warland
Journal:  Science       Date:  1991-06-28       Impact factor: 47.728

5.  Coding of time-varying electric field amplitude modulations in a wave-type electric fish.

Authors:  R Wessel; C Koch; F Gabbiani
Journal:  J Neurophysiol       Date:  1996-06       Impact factor: 2.714

6.  Information theoretic analysis of dynamical encoding by four identified primary sensory interneurons in the cricket cercal system.

Authors:  F Theunissen; J C Roddey; S Stufflebeam; H Clague; J P Miller
Journal:  J Neurophysiol       Date:  1996-04       Impact factor: 2.714

7.  From stimulus encoding to feature extraction in weakly electric fish.

Authors:  F Gabbiani; W Metzner; R Wessel; C Koch
Journal:  Nature       Date:  1996-12-12       Impact factor: 49.962

8.  Alopex: a stochastic method for determining visual receptive fields.

Authors:  E Harth; E Tzanakou
Journal:  Vision Res       Date:  1974-12       Impact factor: 1.886

9.  Naturalistic stimuli increase the rate and efficiency of information transmission by primary auditory afferents.

Authors:  F Rieke; D A Bodnar; W Bialek
Journal:  Proc Biol Sci       Date:  1995-12-22       Impact factor: 5.349

10.  In search of the best stimulus: an optimization procedure for finding efficient stimuli in the cat auditory cortex.

Authors:  I Nelken; Y Prut; E Vaadia; M Abeles
Journal:  Hear Res       Date:  1994-01       Impact factor: 3.208

  10 in total
  7 in total

1.  Automating the design of informative sequences of sensory stimuli.

Authors:  Jeremy Lewi; David M Schneider; Sarah M N Woolley; Liam Paninski
Journal:  J Comput Neurosci       Date:  2010-06-16       Impact factor: 1.621

2.  Brian 2, an intuitive and efficient neural simulator.

Authors:  Romain Brette; Dan Fm Goodman; Marcel Stimberg
Journal:  Elife       Date:  2019-08-20       Impact factor: 8.140

3.  Online stimulus optimization rapidly reveals multidimensional selectivity in auditory cortical neurons.

Authors:  Anna R Chambers; Kenneth E Hancock; Kamal Sen; Daniel B Polley
Journal:  J Neurosci       Date:  2014-07-02       Impact factor: 6.167

4.  Ideal observer analysis of signal quality in retinal circuits.

Authors:  Robert G Smith; Narender K Dhingra
Journal:  Prog Retin Eye Res       Date:  2009-05-13       Impact factor: 21.198

5.  Active learning of cortical connectivity from two-photon imaging data.

Authors:  Martín A Bertrán; Natalia L Martínez; Ye Wang; David Dunson; Guillermo Sapiro; Dario Ringach
Journal:  PLoS One       Date:  2018-05-02       Impact factor: 3.240

Review 6.  Neurophysiology goes wild: from exploring sensory coding in sound proof rooms to natural environments.

Authors:  Heiner Römer
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2021-04-09       Impact factor: 1.836

7.  The Automatic Neuroscientist: A framework for optimizing experimental design with closed-loop real-time fMRI.

Authors:  Romy Lorenz; Ricardo Pio Monti; Inês R Violante; Christoforos Anagnostopoulos; Aldo A Faisal; Giovanni Montana; Robert Leech
Journal:  Neuroimage       Date:  2016-01-21       Impact factor: 6.556

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.