Literature DB >> 20556641

Automating the design of informative sequences of sensory stimuli.

Jeremy Lewi1, David M Schneider, Sarah M N Woolley, Liam Paninski.   

Abstract

Adaptive stimulus design methods can potentially improve the efficiency of sensory neurophysiology experiments significantly; however, designing optimal stimulus sequences in real time remains a serious technical challenge. Here we describe two approximate methods for generating informative stimulus sequences: the first approach provides a fast method for scoring the informativeness of a batch of specific potential stimulus sequences, while the second method attempts to compute an optimal stimulus distribution from which the experimenter may easily sample. We apply these methods to single-neuron spike train data recorded from the auditory midbrain of zebra finches, and demonstrate that the resulting stimulus sequences do in fact provide more information about neuronal tuning in a shorter amount of time than do more standard experimental designs.

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Year:  2010        PMID: 20556641      PMCID: PMC3244976          DOI: 10.1007/s10827-010-0248-1

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  28 in total

1.  Recording spikes from a large fraction of the ganglion cells in a retinal patch.

Authors:  Ronen Segev; Joe Goodhouse; Jason Puchalla; Michael J Berry
Journal:  Nat Neurosci       Date:  2004-10       Impact factor: 24.884

2.  Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex.

Authors:  Kenichi Ohki; Sooyoung Chung; Yeang H Ch'ng; Prakash Kara; R Clay Reid
Journal:  Nature       Date:  2005-01-19       Impact factor: 49.962

3.  A novel model-based hearing compensation design using a gradient-free optimization method.

Authors:  Zhe Chen; Suzanna Becker; Jeff Bondy; Ian C Bruce; Simon Haykin
Journal:  Neural Comput       Date:  2005-12       Impact factor: 2.026

4.  Adaptive stimulus optimization for auditory cortical neurons.

Authors:  Kevin N O'Connor; Christopher I Petkov; Mitchell L Sutter
Journal:  J Neurophysiol       Date:  2005-08-31       Impact factor: 2.714

5.  Asymptotic theory of information-theoretic experimental design.

Authors:  Liam Paninski
Journal:  Neural Comput       Date:  2005-07       Impact factor: 2.026

6.  Sequential structure of neocortical spontaneous activity in vivo.

Authors:  Artur Luczak; Peter Barthó; Stephan L Marguet; György Buzsáki; Kenneth D Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-21       Impact factor: 11.205

7.  Stimulus-dependent auditory tuning results in synchronous population coding of vocalizations in the songbird midbrain.

Authors:  Sarah M N Woolley; Patrick R Gill; Frédéric E Theunissen
Journal:  J Neurosci       Date:  2006-03-01       Impact factor: 6.167

8.  Sequential optimal design of neurophysiology experiments.

Authors:  Jeremy Lewi; Robert Butera; Liam Paninski
Journal:  Neural Comput       Date:  2009-03       Impact factor: 2.026

9.  Optimizing sound features for cortical neurons.

Authors:  R C deCharms; D T Blake; M M Merzenich
Journal:  Science       Date:  1998-05-29       Impact factor: 47.728

10.  A neural code for three-dimensional object shape in macaque inferotemporal cortex.

Authors:  Yukako Yamane; Eric T Carlson; Katherine C Bowman; Zhihong Wang; Charles E Connor
Journal:  Nat Neurosci       Date:  2008-10-05       Impact factor: 24.884

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  8 in total

1.  Searching for optimal stimuli: ascending a neuron's response function.

Authors:  Melinda Evrithiki Koelling; Duane Q Nykamp
Journal:  J Comput Neurosci       Date:  2012-05-13       Impact factor: 1.621

2.  Information theory in neuroscience.

Authors:  Alexander G Dimitrov; Aurel A Lazar; Jonathan D Victor
Journal:  J Comput Neurosci       Date:  2011-02       Impact factor: 1.621

Review 3.  Hierarchical representations in the auditory cortex.

Authors:  Tatyana O Sharpee; Craig A Atencio; Christoph E Schreiner
Journal:  Curr Opin Neurobiol       Date:  2011-06-23       Impact factor: 6.627

4.  Online stimulus optimization rapidly reveals multidimensional selectivity in auditory cortical neurons.

Authors:  Anna R Chambers; Kenneth E Hancock; Kamal Sen; Daniel B Polley
Journal:  J Neurosci       Date:  2014-07-02       Impact factor: 6.167

5.  Adaptive stimulus selection for multi-alternative psychometric functions with lapses.

Authors:  Ji Hyun Bak; Jonathan W Pillow
Journal:  J Vis       Date:  2018-11-01       Impact factor: 2.240

6.  Mapping and cracking sensorimotor circuits in genetic model organisms.

Authors:  Damon A Clark; Limor Freifeld; Thomas R Clandinin
Journal:  Neuron       Date:  2013-05-22       Impact factor: 17.173

Review 7.  Improving scalability in systems neuroscience.

Authors:  Zhe Sage Chen; Bijan Pesaran
Journal:  Neuron       Date:  2021-04-07       Impact factor: 18.688

Review 8.  Adaptive stimulus optimization for sensory systems neuroscience.

Authors:  Christopher DiMattina; Kechen Zhang
Journal:  Front Neural Circuits       Date:  2013-06-06       Impact factor: 3.492

  8 in total

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