Literature DB >> 15215336

Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA.

Christian G Noble1, Philip A Walker, Lesley J Calder, Ian A Taylor.   

Abstract

The Rna14-Rna15 complex is a core component of the cleavage factor IA RNA-processing complex from Saccharomyces cerevisiae. To understand the assembly and RNA-binding properties, we have isolated and characterized the Rna14-Rna15 complex using a combination of biochemical and biophysical methods. Analysis of the purified complex, using transmission electron microscopy, reveals that the two proteins assemble into a kinked rod-shaped structure and that these rods are able to further self-associate. Analytical ultracentrifugation reveals that Rna14 mediates this association and facilitates assembly of an A2B2 tetramer (M(r) 230 000), where relatively compact Rna14-Rna15 heterodimers are in rapid equilibrium with tetramers that have a more extended shape. The Rna14-Rna15 complex, unlike the individual components, binds to an RNA oligonucleotide derived from the 3'-untranslated region of the S.cerevisiae GAL7 gene. Based on these structural and thermodynamic data, we propose that CFIA assembly regulates RNA-binding activity.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15215336      PMCID: PMC443540          DOI: 10.1093/nar/gkh664

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  41 in total

1.  Patterns of variant polyadenylation signal usage in human genes.

Authors:  E Beaudoing; S Freier; J R Wyatt; J M Claverie; D Gautheret
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

2.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

3.  Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation.

Authors:  S Gross; C L Moore
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

4.  Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

Authors:  E Pauws; A H van Kampen; S A van de Graaf; J J de Vijlder; C Ris-Stalpers
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

5.  Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae.

Authors:  D Barillà; B A Lee; N J Proudfoot
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

6.  Transcriptional termination factors for RNA polymerase II in yeast.

Authors:  A Aranda; N Proudfoot
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

7.  Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination.

Authors:  O Calvo; J L Manley
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

8.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

9.  Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I.

Authors:  S Gross; C Moore
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-08       Impact factor: 11.205

10.  Magoh, a human homolog of Drosophila mago nashi protein, is a component of the splicing-dependent exon-exon junction complex.

Authors:  N Kataoka; M D Diem; V N Kim; J Yong; G Dreyfuss
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

View more
  23 in total

1.  Crystal structure of the Rna14-Rna15 complex.

Authors:  Ashley R Paulson; Liang Tong
Journal:  RNA       Date:  2012-04-18       Impact factor: 4.942

Review 2.  Pre-mRNA 3'-end processing complex assembly and function.

Authors:  Serena Chan; Eun-A Choi; Yongsheng Shi
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-10-18       Impact factor: 9.957

Review 3.  Protein factors in pre-mRNA 3'-end processing.

Authors:  C R Mandel; Y Bai; L Tong
Journal:  Cell Mol Life Sci       Date:  2008-04       Impact factor: 9.261

4.  Structural and biochemical analysis of the assembly and function of the yeast pre-mRNA 3' end processing complex CF I.

Authors:  Ravi Pratap Barnwal; Susan D Lee; Claire Moore; Gabriele Varani
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

Review 5.  Delineating the structural blueprint of the pre-mRNA 3'-end processing machinery.

Authors:  Kehui Xiang; Liang Tong; James L Manley
Journal:  Mol Cell Biol       Date:  2014-03-03       Impact factor: 4.272

6.  Hexameric architecture of CstF supported by CstF-50 homodimerization domain structure.

Authors:  María Moreno-Morcillo; Lionel Minvielle-Sébastia; Cameron Mackereth; Sébastien Fribourg
Journal:  RNA       Date:  2011-01-13       Impact factor: 4.942

Review 7.  Structural biology of poly(A) site definition.

Authors:  Qin Yang; Sylvie Doublié
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-04-27       Impact factor: 9.957

8.  Fission yeast Ctf1, a cleavage and polyadenylation factor subunit is required for the maintenance of genomic integrity.

Authors:  Amit Sonkar; Sachin Gaurav; Shakil Ahmed
Journal:  Mol Genet Genomics       Date:  2017-05-31       Impact factor: 3.291

9.  Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain.

Authors:  Bradley M Lunde; Steve L Reichow; Minkyu Kim; Hyunsuk Suh; Thomas C Leeper; Fan Yang; Hannes Mutschler; Stephen Buratowski; Anton Meinhart; Gabriele Varani
Journal:  Nat Struct Mol Biol       Date:  2010-09-05       Impact factor: 15.369

10.  Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3'-end processing factors.

Authors:  Christina Pancevac; David C Goldstone; Andres Ramos; Ian A Taylor
Journal:  Nucleic Acids Res       Date:  2010-01-21       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.