Literature DB >> 15198986

Multiple interactions between regulatory regions are required to stabilize an active chromatin hub.

George P Patrinos1, Mariken de Krom, Ernie de Boer, An Langeveld, A M Ali Imam, John Strouboulis, Wouter de Laat, Frank G Grosveld.   

Abstract

The human beta-globin locus control region (LCR) is required for the maintenance of an open chromatin configuration of the locus. It interacts with the genes and the hypersensitive regions flanking the locus to form an active chromatin hub (ACH) transcribing the genes. Proper developmental control of globin genes is largely determined by gene proximal regulatory sequences. Here, we provide the first functional evidence of the role of the most active sites of the LCR and the promoter of the beta-globin gene in the maintenance of the ACH. When the human beta-globin gene promoter is deleted in the context of a full LCR, the ACH is maintained with the beta-globin gene remaining in proximity. Additional deletion of hypersensitive site HS3 or HS2 of the LCR shows that HS3, but not HS2, in combination with the beta-globin promoter is crucial for the maintenance of the ACH at the definitive stage. We conclude that multiple interactions between the LCR and the beta-globin gene are required to maintain the appropriate spatial configuration in vivo.

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Year:  2004        PMID: 15198986      PMCID: PMC423198          DOI: 10.1101/gad.289704

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  39 in total

1.  A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus.

Authors:  Michael Bulger; Dirk Schübeler; M A Bender; Joan Hamilton; Catherine M Farrell; Ross C Hardison; Mark Groudine
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

2.  3C technology: analyzing the spatial organization of genomic loci in vivo.

Authors:  Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

3.  The "beta-like-globin" gene domain in human erythroid cells.

Authors:  D Tuan; W Solomon; Q Li; I M London
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

4.  Conserved CTCF insulator elements flank the mouse and human beta-globin loci.

Authors:  Catherine M Farrell; Adam G West; Gary Felsenfeld
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

5.  Long-range chromatin regulatory interactions in vivo.

Authors:  David Carter; Lyubomira Chakalova; Cameron S Osborne; Yan-feng Dai; Peter Fraser
Journal:  Nat Genet       Date:  2002-11-11       Impact factor: 38.330

6.  The beta-globin nuclear compartment in development and erythroid differentiation.

Authors:  Robert-Jan Palstra; Bas Tolhuis; Erik Splinter; Rian Nijmeijer; Frank Grosveld; Wouter de Laat
Journal:  Nat Genet       Date:  2003-09-21       Impact factor: 38.330

7.  HS5 of the human beta-globin locus control region: a developmental stage-specific border in erythroid cells.

Authors:  Albert W K Wai; Nynke Gillemans; Selina Raguz-Bolognesi; Sara Pruzina; Gaetano Zafarana; Dies Meijer; Sjaak Philipsen; Frank Grosveld
Journal:  EMBO J       Date:  2003-09-01       Impact factor: 11.598

8.  Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia.

Authors:  D Kioussis; E Vanin; T deLange; R A Flavell; F G Grosveld
Journal:  Nature       Date:  1983 Dec 15-21       Impact factor: 49.962

9.  Position-independent, high-level expression of the human beta-globin gene in transgenic mice.

Authors:  F Grosveld; G B van Assendelft; D R Greaves; G Kollias
Journal:  Cell       Date:  1987-12-24       Impact factor: 41.582

Review 10.  Spatial organization of gene expression: the active chromatin hub.

Authors:  Wouter de Laat; Frank Grosveld
Journal:  Chromosome Res       Date:  2003       Impact factor: 4.620

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  72 in total

1.  The active spatial organization of the beta-globin locus requires the transcription factor EKLF.

Authors:  Roy Drissen; Robert-Jan Palstra; Nynke Gillemans; Erik Splinter; Frank Grosveld; Sjaak Philipsen; Wouter de Laat
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

2.  Genome architecture of the human beta-globin locus affects developmental regulation of gene expression.

Authors:  Susanna Harju; Patrick A Navas; George Stamatoyannopoulos; Kenneth R Peterson
Journal:  Mol Cell Biol       Date:  2005-10       Impact factor: 4.272

3.  Understanding globin regulation in beta-thalassemia: it's as simple as alpha, beta, gamma, delta.

Authors:  Arthur Bank
Journal:  J Clin Invest       Date:  2005-06       Impact factor: 14.808

Review 4.  Regulation of human fetal hemoglobin: new players, new complexities.

Authors:  Arthur Bank
Journal:  Blood       Date:  2005-08-18       Impact factor: 22.113

5.  Synergistic and additive properties of the beta-globin locus control region (LCR) revealed by 5'HS3 deletion mutations: implication for LCR chromatin architecture.

Authors:  Xiangdong Fang; Jin Sun; Ping Xiang; Man Yu; Patrick A Navas; Kenneth R Peterson; George Stamatoyannopoulos; Qiliang Li
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

6.  Genome-wide scanning of HoxB1-associated loci in mouse ES cells using an open-ended Chromosome Conformation Capture methodology.

Authors:  Hugo Würtele; Pierre Chartrand
Journal:  Chromosome Res       Date:  2006-07-12       Impact factor: 5.239

7.  Active chromatin hub of the mouse alpha-globin locus forms in a transcription factory of clustered housekeeping genes.

Authors:  Guo-Ling Zhou; Li Xin; Wei Song; Li-Jun Di; Guang Liu; Xue-Song Wu; De-Pei Liu; Chih-Chuan Liang
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

8.  Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.

Authors:  Ekaterina Savitskaya; Larisa Melnikova; Margarita Kostuchenko; Elena Kravchenko; Ekaterina Pomerantseva; Tatiana Boikova; Darya Chetverina; Aleksander Parshikov; Polyna Zobacheva; Elena Gracheva; Alexander Galkin; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

9.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

10.  Cooperativeness of the higher chromatin structure of the beta-globin locus revealed by the deletion mutations of DNase I hypersensitive site 3 of the LCR.

Authors:  Xiangdong Fang; Ping Xiang; Wenxuan Yin; George Stamatoyannopoulos; Qiliang Li
Journal:  J Mol Biol       Date:  2006-10-03       Impact factor: 5.469

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