Literature DB >> 12941700

HS5 of the human beta-globin locus control region: a developmental stage-specific border in erythroid cells.

Albert W K Wai1, Nynke Gillemans, Selina Raguz-Bolognesi, Sara Pruzina, Gaetano Zafarana, Dies Meijer, Sjaak Philipsen, Frank Grosveld.   

Abstract

Elements with insulator/border activity have been characterized most extensively in Drosophila melanogaster. In vertebrates, the first example of such an element was provided by a hypersensitive site of the chicken beta-globin locus, cHS4. It has been proposed that the homologous site in humans, HS5, functions as a border of the human beta-globin locus. Here, we have characterized HS5 of the human beta-globin locus control region. We have examined its tissue-specificity and assessed its insulating properties in transgenic mice using a lacZ reporter assay. Most importantly, we have tested its enhancer blocking activity in the context of the full beta-globin locus. Our results show that HS5 is erythroid-specific rather than ubiquitous in human tissues. Furthermore, HS5 does not fulfil the criteria of a general in vivo insulator in the transgene protection assay. Finally, a HS5 conditional deletion from the complete locus demonstrates that HS5 has no discernable activity in adult erythroid cells. Surprisingly, HS5 functions as an enhancer blocker in embryonic erythroid cells. We conclude that HS5 is a developmental stage-specific border in erythroid cells.

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Year:  2003        PMID: 12941700      PMCID: PMC202379          DOI: 10.1093/emboj/cdg437

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  65 in total

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Authors:  Padraic P Levings; Jörg Bungert
Journal:  Eur J Biochem       Date:  2002-03

2.  Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci.

Authors:  M D Litt; M Simpson; F Recillas-Targa; M N Prioleau; G Felsenfeld
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

3.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

4.  A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

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Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

5.  A position-effect assay for boundaries of higher order chromosomal domains.

Authors:  R Kellum; P Schedl
Journal:  Cell       Date:  1991-03-08       Impact factor: 41.582

6.  Mapping of DNase I-hypersensitive sites in the upstream DNA of human embryonic epsilon-globin gene in K562 leukemia cells.

Authors:  D Tuan; I M London
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

7.  Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region.

Authors:  M A Bender; M Bulger; J Close; M Groudine
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

8.  Heterochromatin effects on the frequency and duration of LCR-mediated gene transcription.

Authors:  E Milot; J Strouboulis; T Trimborn; M Wijgerde; E de Boer; A Langeveld; K Tan-Un; W Vergeer; N Yannoutsos; F Grosveld; P Fraser
Journal:  Cell       Date:  1996-10-04       Impact factor: 41.582

9.  Intron-exon structure, alternative use of promoter and expression of the mouse collagen X gene, Col10a-1.

Authors:  R Y Kong; K M Kwan; E T Lau; J T Thomas; R P Boot-Handford; M E Grant; K S Cheah
Journal:  Eur J Biochem       Date:  1993-04-01

10.  Position-independent, high-level expression of the human beta-globin gene in transgenic mice.

Authors:  F Grosveld; G B van Assendelft; D R Greaves; G Kollias
Journal:  Cell       Date:  1987-12-24       Impact factor: 41.582

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  11 in total

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Authors:  George P Patrinos; Mariken de Krom; Ernie de Boer; An Langeveld; A M Ali Imam; John Strouboulis; Wouter de Laat; Frank G Grosveld
Journal:  Genes Dev       Date:  2004-06-15       Impact factor: 11.361

2.  Synergistic and additive properties of the beta-globin locus control region (LCR) revealed by 5'HS3 deletion mutations: implication for LCR chromatin architecture.

Authors:  Xiangdong Fang; Jin Sun; Ping Xiang; Man Yu; Patrick A Navas; Kenneth R Peterson; George Stamatoyannopoulos; Qiliang Li
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

3.  CTCF-dependent enhancer-blocking by alternative chromatin loop formation.

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4.  Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.

Authors:  David C King; James Taylor; Laura Elnitski; Francesca Chiaromonte; Webb Miller; Ross C Hardison
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5.  An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene.

Authors:  Hui Zhao; Ann Dean
Journal:  Nucleic Acids Res       Date:  2004-09-15       Impact factor: 16.971

6.  Investigating the Barrier Activity of Novel, Human Enhancer-Blocking Chromatin Insulators for Hematopoietic Stem Cell Gene Therapy.

Authors:  Penelope-Georgia Papayanni; Nikoletta Psatha; Panayota Christofi; Xing-Guo Li; Pamela Melo; Monica Volpin; Eugenio Montini; Mingdong Liu; Georgios Kaltsounis; Minas Yiangou; David W Emery; Achilles Anagnostopoulos; Thalia Papayannopoulou; Suming Huang; George Stamatoyannopoulos; Evangelia Yannaki
Journal:  Hum Gene Ther       Date:  2021-10       Impact factor: 4.793

7.  Gene specificity of suppression of transgene-mediated insertional transcriptional activation by the chicken HS4 insulator.

Authors:  Romain Desprat; Eric E Bouhassira
Journal:  PLoS One       Date:  2009-06-18       Impact factor: 3.240

8.  Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region.

Authors:  Daan Noordermeer; Miguel R Branco; Erik Splinter; Petra Klous; Wilfred van Ijcken; Sigrid Swagemakers; Manousos Koutsourakis; Peter van der Spek; Ana Pombo; Wouter de Laat
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9.  Nucleosome and transcription activator antagonism at human beta-globin locus control region DNase I hypersensitive sites.

Authors:  AeRi Kim; Sang-hyun Song; Marjorie Brand; Ann Dean
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10.  5'HS5 of the human beta-globin locus control region is dispensable for the formation of the beta-globin active chromatin hub.

Authors:  Ping Kei Chan; Albert Wai; Sjaak Philipsen; Kian-Cheng Tan-Un
Journal:  PLoS One       Date:  2008-05-07       Impact factor: 3.240

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