Literature DB >> 15193315

Riboswitches exert genetic control through metabolite-induced conformational change.

Juliane K Soukup1, Garrett A Soukup.   

Abstract

Conserved RNA structures have traditionally been thought of as potential binding sites for protein factors and consequently are regarded as fulfilling relatively passive albeit important roles in cellular processes. With the discovery of riboswitches, RNA no longer takes a backseat to protein when it comes to affecting gene expression. Riboswitches bind directly to cellular metabolites with exceptional specificity and affinity, and exert control over gene expression through ligand-induced conformational changes in RNA structure. Riboswitches now represent a widespread mechanism by which cells monitor their metabolic state and facilely alter gene expression in response to changing conditions.

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Year:  2004        PMID: 15193315     DOI: 10.1016/j.sbi.2004.04.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  47 in total

1.  Real-time multidimensional NMR follows RNA folding with second resolution.

Authors:  Mi-Kyung Lee; Maayan Gal; Lucio Frydman; Gabriele Varani
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

2.  Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae.

Authors:  Jan Lipfert; Rhiju Das; Vincent B Chu; Madhuri Kudaravalli; Nathan Boyd; Daniel Herschlag; Sebastian Doniach
Journal:  J Mol Biol       Date:  2006-10-13       Impact factor: 5.469

3.  An artificial riboswitch for controlling pre-mRNA splicing.

Authors:  Dong-Suk Kim; Veronica Gusti; Sailesh G Pillai; Rajesh K Gaur
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

4.  Identification of a large noncoding RNA in extremophilic eubacteria.

Authors:  Elena Puerta-Fernandez; Jeffrey E Barrick; Adam Roth; Ronald R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-12       Impact factor: 11.205

5.  Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification.

Authors:  Stanley Ng Kwang Loong; Santosh K Mishra
Journal:  RNA       Date:  2006-12-28       Impact factor: 4.942

6.  RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone.

Authors:  Xueyi Wang; Gary Kapral; Laura Murray; David Richardson; Jane Richardson; Jack Snoeyink
Journal:  J Math Biol       Date:  2007-03-31       Impact factor: 2.259

7.  Core requirements of the adenine riboswitch aptamer for ligand binding.

Authors:  Jean-François Lemay; Daniel A Lafontaine
Journal:  RNA       Date:  2007-01-02       Impact factor: 4.942

8.  Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.

Authors:  Alexander Serganov; Anna Polonskaia; Anh Tuân Phan; Ronald R Breaker; Dinshaw J Patel
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

9.  Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.

Authors:  Andreas Wachter; Meral Tunc-Ozdemir; Beth C Grove; Pamela J Green; David K Shintani; Ronald R Breaker
Journal:  Plant Cell       Date:  2007-11-09       Impact factor: 11.277

Review 10.  Emerging applications of riboswitches in chemical biology.

Authors:  Shana Topp; Justin P Gallivan
Journal:  ACS Chem Biol       Date:  2010-01-15       Impact factor: 5.100

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