Literature DB >> 15193311

A structural perspective on protein-protein interactions.

Robert B Russell1, Frank Alber, Patrick Aloy, Fred P Davis, Dmitry Korkin, Matthieu Pichaud, Maya Topf, Andrej Sali.   

Abstract

Structures of macromolecular complexes are necessary for a mechanistic description of biochemical and cellular processes. They can be solved by experimental methods, such as X-ray crystallography, NMR spectroscopy and electron microscopy, as well as by computational protein structure prediction, docking and bioinformatics. Recent advances and applications of these methods emphasize the need for hybrid approaches that combine a variety of data to achieve better efficiency, accuracy, resolution and completeness.

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Year:  2004        PMID: 15193311     DOI: 10.1016/j.sbi.2004.04.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  70 in total

Review 1.  Tools used to study how protein complexes are assembled in signaling cascades.

Authors:  Susan Dwane; Patrick A Kiely
Journal:  Bioeng Bugs       Date:  2011-09-01

2.  Templates are available to model nearly all complexes of structurally characterized proteins.

Authors:  Petras J Kundrotas; Zhengwei Zhu; Joël Janin; Ilya A Vakser
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

3.  iAlign: a method for the structural comparison of protein-protein interfaces.

Authors:  Mu Gao; Jeffrey Skolnick
Journal:  Bioinformatics       Date:  2010-07-11       Impact factor: 6.937

4.  Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected.

Authors:  Mu Gao; Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

Review 5.  Reporter gene imaging of protein-protein interactions in living subjects.

Authors:  Tarik F Massoud; Ramasamy Paulmurugan; Abhijit De; Pritha Ray; Sanjiv S Gambhir
Journal:  Curr Opin Biotechnol       Date:  2007-01-24       Impact factor: 9.740

6.  Subunit architecture of multimeric complexes isolated directly from cells.

Authors:  Helena Hernández; Andrzej Dziembowski; Thomas Taverner; Bertrand Séraphin; Carol V Robinson
Journal:  EMBO Rep       Date:  2006-05-19       Impact factor: 8.807

7.  Computational methods for biomolecular electrostatics.

Authors:  Feng Dong; Brett Olsen; Nathan A Baker
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

8.  M-TASSER: an algorithm for protein quaternary structure prediction.

Authors:  Huiling Chen; Jeffrey Skolnick
Journal:  Biophys J       Date:  2007-09-28       Impact factor: 4.033

9.  Mapping of protein-protein interaction sites by the 'absence of interference' approach.

Authors:  Arunkumar Dhayalan; Tomasz P Jurkowski; Heike Laser; Richard Reinhardt; Da Jia; Xiaodong Cheng; Albert Jeltsch
Journal:  J Mol Biol       Date:  2007-12-23       Impact factor: 5.469

10.  SSMap: a new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase.

Authors:  Fabrice P A David; Yum L Yip
Journal:  BMC Bioinformatics       Date:  2008-09-23       Impact factor: 3.169

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