Literature DB >> 15189849

Lipid bilayer pressure profiles and mechanosensitive channel gating.

Justin Gullingsrud1, Klaus Schulten.   

Abstract

The function of membrane proteins often depends on the proteins' interaction with their lipid environment, spectacularly so in the case of mechanosensitive channels, which are gated through tension mediated by the surrounding lipids. Lipid bilayer tension is distributed quite inhomogeneously, but neither the scale at which relevant variation takes place nor the effect of varying lipid composition or tension has yet been investigated in atomic detail. We calculated lateral pressure profile distributions in lipid bilayers of various composition from all-atom molecular dynamics simulations totaling 110.5 ns in length. Reproducible pressure profile features at the 1 A length scale were determined. Lipids with phosphatidylcholine headgroups were found to shift the lateral pressure out of the hydrophobic core and into the headgroup region by an amount that is independent of area per lipid. POPE bilayers simulated at areas smaller than optimal exerted dramatically higher lateral pressure in a narrow region at the start of the aliphatic chain. Stretching of POPC bilayers increased tension predominantly in the same region. A simple geometric analysis for the gating of the mechanosensitive channel MscL suggests that pressure profiles affect its gating through the second moment of the profile in a tension-independent manner.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15189849      PMCID: PMC1304254          DOI: 10.1529/biophysj.103.034322

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

1.  Inclusion-induced bilayer deformations: effects of monolayer equilibrium curvature.

Authors:  C Nielsen; O S Andersen
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

2.  Structural models of the MscL gating mechanism.

Authors:  S Sukharev; S R Durell; H R Guy
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

Review 3.  How proteins adapt to a membrane-water interface.

Authors:  J A Killian; G von Heijne
Journal:  Trends Biochem Sci       Date:  2000-09       Impact factor: 13.807

Review 4.  Modeling the lipid component of membranes.

Authors:  H Larry Scott
Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

5.  Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime.

Authors:  H W Huang
Journal:  Biophys J       Date:  1986-12       Impact factor: 4.033

6.  Energetics of inclusion-induced bilayer deformations.

Authors:  C Nielsen; M Goulian; O S Andersen
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

7.  Molecular distributions in interphases: statistical mechanical theory combined with molecular dynamics simulation of a model lipid bilayer.

Authors:  T X Xiang; B D Anderson
Journal:  Biophys J       Date:  1994-03       Impact factor: 4.033

8.  Energetic and spatial parameters for gating of the bacterial large conductance mechanosensitive channel, MscL.

Authors:  S I Sukharev; W J Sigurdson; C Kung; F Sachs
Journal:  J Gen Physiol       Date:  1999-04       Impact factor: 4.086

9.  Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating.

Authors:  Eduardo Perozo; Anna Kloda; D Marien Cortes; Boris Martinac
Journal:  Nat Struct Biol       Date:  2002-09

10.  Investigating lipid composition effects on the mechanosensitive channel of large conductance (MscL) using molecular dynamics simulations.

Authors:  Donald E Elmore; Dennis A Dougherty
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

View more
  115 in total

Review 1.  Extending molecular modeling methodology to study insertion of membrane nanopores.

Authors:  Aleksij Aksimentiev; Klaus Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-22       Impact factor: 11.205

2.  An implicit solvent coarse-grained lipid model with correct stress profile.

Authors:  Alex J Sodt; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2010-05-28       Impact factor: 3.488

3.  Lipid bilayer molecular dynamics study of lipid-derived agonists of the putative cannabinoid receptor, GPR55.

Authors:  Evangelia Kotsikorou; Diane L Lynch; Mary E Abood; Patricia H Reggio
Journal:  Chem Phys Lipids       Date:  2010-12-24       Impact factor: 3.329

4.  Molecular dynamics study of MscL interactions with a curved lipid bilayer.

Authors:  Grischa R Meyer; Justin Gullingsrud; Klaus Schulten; Boris Martinac
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

5.  Theoretical studies of the M2 transmembrane segment of the glycine receptor: models of the open pore structure and current-voltage characteristics.

Authors:  Mary Hongying Cheng; Michael Cascio; Rob D Coalson
Journal:  Biophys J       Date:  2005-06-10       Impact factor: 4.033

Review 6.  Molecular dynamics simulations of proteins in lipid bilayers.

Authors:  James Gumbart; Yi Wang; Alekseij Aksimentiev; Emad Tajkhorshid; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2005-08       Impact factor: 6.809

7.  Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers.

Authors:  Michael Patra; Emppu Salonen; Emma Terama; Ilpo Vattulainen; Roland Faller; Bryan W Lee; Juha Holopainen; Mikko Karttunen
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

8.  Molecular dynamics study of gating in the mechanosensitive channel of small conductance MscS.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

Review 9.  Influences of membrane mimetic environments on membrane protein structures.

Authors:  Huan-Xiang Zhou; Timothy A Cross
Journal:  Annu Rev Biophys       Date:  2013-03-01       Impact factor: 12.981

10.  Symmetry-restrained molecular dynamics simulations improve homology models of potassium channels.

Authors:  Andriy Anishkin; Adina L Milac; H Robert Guy
Journal:  Proteins       Date:  2010-03
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.