Literature DB >> 12163073

Modeling the lipid component of membranes.

H Larry Scott1.   

Abstract

During the past several years, there have been a number of advances in the computational and theoretical modeling of lipid bilayer structural and dynamical properties. Molecular dynamics (MD) simulations have increased in length and time scales by about an order of magnitude. MD simulations continue to be applied to more complex systems, including mixed bilayers and bilayer self-assembly. A critical problem is bridging the gap between the still very small MD simulations and the time and length scales of experimental observations. Several new and promising techniques, which use atomic-level correlation and response functions from simulations as input to coarse-grained modeling, are being pursued.

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Year:  2002        PMID: 12163073     DOI: 10.1016/s0959-440x(02)00353-6

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

1.  Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers.

Authors:  Emma Falck; Michael Patra; Mikko Karttunen; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

2.  Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.

Authors:  Jussi Aittoniemi; Perttu S Niemelä; Marja T Hyvönen; Mikko Karttunen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

3.  Comparative molecular dynamics study of lipid membranes containing cholesterol and ergosterol.

Authors:  Jacek Czub; Maciej Baginski
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

4.  Atomistic simulation studies of cholesteryl oleates: model for the core of lipoprotein particles.

Authors:  Mikko Heikelä; Ilpo Vattulainen; Marja T Hyvönen
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

5.  Effect of local anesthetic lidocaine on electrostatic properties of a lipid bilayer.

Authors:  Carl-Johan Högberg; Alexander P Lyubartsev
Journal:  Biophys J       Date:  2007-08-24       Impact factor: 4.033

6.  The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models.

Authors:  W G Noid; Pu Liu; Yanting Wang; Jhih-Wei Chu; Gary S Ayton; Sergei Izvekov; Hans C Andersen; Gregory A Voth
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

7.  The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures.

Authors:  Vinod Krishna; Will G Noid; Gregory A Voth
Journal:  J Chem Phys       Date:  2009-07-14       Impact factor: 3.488

8.  Lateral organization in lipid-cholesterol mixed bilayers.

Authors:  Sagar A Pandit; George Khelashvili; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

9.  Molecular dynamics simulations of the lipid bilayer edge.

Authors:  Frank Y Jiang; Yann Bouret; James T Kindt
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

10.  Simulations of Biomembranes and Water: Important Technical Aspects.

Authors:  Sandra V Bennun; Allison N Dickey; Chenyue Xing; Roland Faller
Journal:  Fluid Phase Equilib       Date:  2007-12-01       Impact factor: 2.775

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