Literature DB >> 11778049

Construction and analysis of a human-chimpanzee comparative clone map.

Asao Fujiyama1, Hidemi Watanabe, Atsushi Toyoda, Todd D Taylor, Takehiko Itoh, Shih-Feng Tsai, Hong-Seog Park, Marie-Laure Yaspo, Hans Lehrach, Zhu Chen, Gang Fu, Naruya Saitou, Kazutoyo Osoegawa, Pieter J de Jong, Yumiko Suto, Masahira Hattori, Yoshiyuki Sakaki.   

Abstract

The recently released human genome sequences provide us with reference data to conduct comparative genomic research on primates, which will be important to understand what genetic information makes us human. Here we present a first-generation human-chimpanzee comparative genome map and its initial analysis. The map was constructed through paired alignment of 77,461 chimpanzee bacterial artificial chromosome end sequences with publicly available human genome sequences. We detected candidate positions, including two clusters on human chromosome 21 that suggest large, nonrandom regions of difference between the two genomes.

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Year:  2002        PMID: 11778049     DOI: 10.1126/science.1065199

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  81 in total

1.  Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.

Authors:  Ge Liu; Shaying Zhao; Jeffrey A Bailey; S Cenk Sahinalp; Can Alkan; Eray Tuzun; Eric D Green; Evan E Eichler
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

2.  Analysis of 5'-end sequences of chimpanzee cDNAs.

Authors:  Ryuichi Sakate; Naoki Osada; Munetomo Hida; Sumio Sugano; Ikuo Hayasaka; Naoko Shimohira; Shinsuke Yanagi; Yumiko Suto; Katsuyuki Hashimoto; Momoki Hirai
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

3.  Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels.

Authors:  Roy J Britten
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-04       Impact factor: 11.205

4.  Selective pressures on the olfactory receptor repertoire since the human-chimpanzee divergence.

Authors:  Alexander A Gimelbrant; Helen Skaletsky; Andrew Chess
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

5.  Large tandem, higher order repeats and regularly dispersed repeat units contribute substantially to divergence between human and chimpanzee Y chromosomes.

Authors:  Vladimir Paar; Matko Glunčić; Ivan Basar; Marija Rosandić; Petar Paar; Mislav Cvitković
Journal:  J Mol Evol       Date:  2010-11-20       Impact factor: 2.395

6.  Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla.

Authors:  Gary M Wilson; Stephane Flibotte; Perseus I Missirlis; Marco A Marra; Steven Jones; Kevin Thornton; Andrew G Clark; Robert A Holt
Journal:  Genome Res       Date:  2005-12-19       Impact factor: 9.043

7.  An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

Authors:  R Andrew Cameron; Suk Hen Chow; Kevin Berney; Tsz-Yeung Chiu; Qiu-Autumn Yuan; Alexander Krämer; Argelia Helguero; Andrew Ransick; Mirong Yun; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

8.  Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SNP analysis.

Authors:  Kuniya Abe; Hideki Noguchi; Keiko Tagawa; Misako Yuzuriha; Atsushi Toyoda; Toshio Kojima; Kiyoshi Ezawa; Naruya Saitou; Masahira Hattori; Yoshiyuki Sakaki; Kazuo Moriwaki; Toshihiko Shiroishi
Journal:  Genome Res       Date:  2004-12       Impact factor: 9.043

9.  Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

Authors:  Anna Wetterbom; Marie Sevov; Lucia Cavelier; Tomas F Bergström
Journal:  J Mol Evol       Date:  2006-10-29       Impact factor: 2.395

Review 10.  Evolution in health and medicine Sackler colloquium: Genomic disorders: a window into human gene and genome evolution.

Authors:  Claudia M B Carvalho; Feng Zhang; James R Lupski
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

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