Literature DB >> 15176811

Discovery of the chemical function of glycosidases: design, synthesis, and evaluation of mass-differentiated carbohydrate libraries.

Yang Yu1, Kwang-Seuk Ko, Corbin J Zea, Nicola L Pohl.   

Abstract

[reaction: see text] Discovery of the catalytic chemical function of the many putative glycosidases coded in genomes currently relies on individual testing of possible substrates, usually as their p-nitrophenol conjugate. Herein, we present an alternative chemical proteomics approach using a synthetic mass-differentiated heat-stable substrate library with mass spectrometry readout. Library components do not serve as reaction inhibitors and both primary and secondary enzyme substrates can be delineated.

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Year:  2004        PMID: 15176811     DOI: 10.1021/ol049389b

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  7 in total

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Authors:  Do Yup Lee; Benjamin P Bowen; Trent R Northen
Journal:  Biotechniques       Date:  2010-08       Impact factor: 1.993

2.  Complete hexose isomer identification with mass spectrometry.

Authors:  Gabe Nagy; Nicola L B Pohl
Journal:  J Am Soc Mass Spectrom       Date:  2015-02-05       Impact factor: 3.109

Review 3.  Investigating metabolite-protein interactions: an overview of available techniques.

Authors:  Grace Xiaolu Yang; Xiyan Li; Michael Snyder
Journal:  Methods       Date:  2012-06-28       Impact factor: 3.608

4.  Metalloprotease Gp63-Targeting Novel Glycoside Exhibits Potential Antileishmanial Activity.

Authors:  Amrita Chakrabarti; Chintam Narayana; Nishant Joshi; Swati Garg; Lalit C Garg; Anand Ranganathan; Ram Sagar; Soumya Pati; Shailja Singh
Journal:  Front Cell Infect Microbiol       Date:  2022-05-04       Impact factor: 6.073

Review 5.  Studies of metabolite-protein interactions: a review.

Authors:  Ryan Matsuda; Cong Bi; Jeanethe Anguizola; Matthew Sobansky; Elliott Rodriguez; John Vargas Badilla; Xiwei Zheng; Benjamin Hage; David S Hage
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2013-11-25       Impact factor: 3.205

6.  A High-Throughput Mass-Spectrometry-Based Assay for Identifying the Biochemical Functions of Putative Glycosidases.

Authors:  Tianyuan Peng; Gabe Nagy; Jonathan C Trinidad; Joy Marie Jackson; Nicola L B Pohl
Journal:  Chembiochem       Date:  2017-10-27       Impact factor: 3.164

7.  Scope and limitations of carbohydrate hydrolysis for de novo glycan sequencing using a hydrogen peroxide/metallopeptide-based glycosidase mimetic.

Authors:  Tianyuan Peng; Zachary Wooke; Nicola L B Pohl
Journal:  Carbohydr Res       Date:  2018-02-03       Impact factor: 2.104

  7 in total

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