Literature DB >> 29475194

Scope and limitations of carbohydrate hydrolysis for de novo glycan sequencing using a hydrogen peroxide/metallopeptide-based glycosidase mimetic.

Tianyuan Peng1, Zachary Wooke1, Nicola L B Pohl2.   

Abstract

Acidic hydrolysis is commonly used as a first step to break down oligo- and polysaccharides into monosaccharide units for structural analysis. While easy to set up and amenable to mass spectrometry detection, acid hydrolysis is not without its drawbacks. For example, ring-destruction side reactions and degradation products, along with difficulties in optimizing conditions from analyte to analyte, greatly limits its broad utility. Herein we report studies on a hydrogen peroxide/CuGGH metallopeptide-based glycosidase mimetic design for a more efficient and controllable carbohydrate hydrolysis. A library of methyl glycosides consisting of ten common monosaccharide substrates, along with oligosaccharide substrates, was screened with the artificial glycosidase for hydrolytic activity in a high-throughput format with a robotic liquid handling system. The artificial glycosidase was found to be active towards most screened linkages, including alpha- and beta-anomers, thus serving as a potential alternative method for traditional acidic hydrolysis approaches of oligosaccharides.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Artificial glycosidase; Carbohydrate hydrolysis; Carbohydrate sequencing; High-throughput screening

Mesh:

Substances:

Year:  2018        PMID: 29475194      PMCID: PMC5931371          DOI: 10.1016/j.carres.2018.01.008

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  25 in total

1.  Characteristic oligosaccharides released from acid hydrolysis for the structural analysis of chondroitin sulfate.

Authors:  Jiaojiao Lu; Chunqing Ai; Li Guo; Yinghuan Fu; Chunyang Cao; Shuang Song
Journal:  Carbohydr Res       Date:  2017-07-26       Impact factor: 2.104

2.  General Label-Free Mass Spectrometry-Based Assay To Identify Glycosidase Substrate Competence.

Authors:  Gabe Nagy; Tianyuan Peng; Nicola L B Pohl
Journal:  Anal Chem       Date:  2016-06-28       Impact factor: 6.986

Review 3.  Hydrolysis of oligosaccharides over solid acid catalysts: a review.

Authors:  Léa Vilcocq; Paula C Castilho; Florbela Carvalheiro; Luís C Duarte
Journal:  ChemSusChem       Date:  2014-02-25       Impact factor: 8.928

4.  Recent Liquid Chromatographic Approaches and Developments for the Separation and Purification of Carbohydrates.

Authors:  Gabe Nagy; Tianyuan Peng; Nicola L B Pohl
Journal:  Anal Methods       Date:  2017-05-24       Impact factor: 2.896

5.  Influences of acidic reaction and hydrolytic conditions on monosaccharide composition analysis of acidic, neutral and basic polysaccharides.

Authors:  Qing-Chi Wang; Xia Zhao; Jiang-Hua Pu; Xiao-Hong Luan
Journal:  Carbohydr Polym       Date:  2016-02-10       Impact factor: 9.381

6.  Complete hexose isomer identification with mass spectrometry.

Authors:  Gabe Nagy; Nicola L B Pohl
Journal:  J Am Soc Mass Spectrom       Date:  2015-02-05       Impact factor: 3.109

7.  Characterization of O-antigen polysaccharide backbone derived from nitric oxide-inducing Mesorhizobium loti MAFF 303099 lipopolysaccharide.

Authors:  Masahito Hashimoto; Masato Mizukami; Ken-Ichi Osuki; Nagatoshi Fujiwara; Yasuo Suda; Toshiki Uchiumi
Journal:  Carbohydr Res       Date:  2017-04-04       Impact factor: 2.104

8.  Quick characterization of uronic acid-containing polysaccharides in 5 shellfishes by oligosaccharide analysis upon acid hydrolysis.

Authors:  Bin Liu; Jiaojiao Lu; Chunqing Ai; Bao Zhang; Li Guo; Shuang Song; Beiwei Zhu
Journal:  Carbohydr Res       Date:  2016-10-11       Impact factor: 2.104

9.  Multidimensional Analysis of 16 Glucose Isomers by Ion Mobility Spectrometry.

Authors:  M M Gaye; G Nagy; D E Clemmer; N L B Pohl
Journal:  Anal Chem       Date:  2016-02-03       Impact factor: 6.986

10.  Cross-Regulation of an Artificial Metalloenzyme.

Authors:  Yasunori Okamoto; Thomas R Ward
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-31       Impact factor: 15.336

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  1 in total

Review 1.  Characterization and Analysis of Food-Sourced Carbohydrates.

Authors:  Leonie J Kiely; Rita M Hickey
Journal:  Methods Mol Biol       Date:  2022
  1 in total

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