Literature DB >> 24321277

Studies of metabolite-protein interactions: a review.

Ryan Matsuda1, Cong Bi1, Jeanethe Anguizola1, Matthew Sobansky1, Elliott Rodriguez1, John Vargas Badilla1, Xiwei Zheng1, Benjamin Hage1, David S Hage2.   

Abstract

The study of metabolomics can provide valuable information about biochemical pathways and processes at the molecular level. There have been many reports that have examined the structure, identity and concentrations of metabolites in biological systems. However, the binding of metabolites with proteins is also of growing interest. This review examines past reports that have looked at the binding of various types of metabolites with proteins. An overview of the techniques that have been used to characterize and study metabolite-protein binding is first provided. This is followed by examples of studies that have investigated the binding of hormones, fatty acids, drugs or other xenobiotics, and their metabolites with transport proteins and receptors. These examples include reports that have considered the structure of the resulting solute-protein complexes, the nature of the binding sites, the strength of these interactions, the variations in these interactions with solute structure, and the kinetics of these reactions. The possible effects of metabolic diseases on these processes, including the impact of alterations in the structure and function of proteins, are also considered.
Copyright © 2013 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Drug–protein interactions; Fatty acid–protein interactions; Hormone–protein interactions; Metabolomics; Protein modification; Xenobiotic–protein interactions

Mesh:

Substances:

Year:  2013        PMID: 24321277      PMCID: PMC4032809          DOI: 10.1016/j.jchromb.2013.11.043

Source DB:  PubMed          Journal:  J Chromatogr B Analyt Technol Biomed Life Sci        ISSN: 1570-0232            Impact factor:   3.205


  151 in total

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Authors:  Marcel J de Groot; Florian Wakenhut; Gavin Whitlock; Ruth Hyland
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Review 4.  Recent advances in chromatographic and electrophoretic methods for the study of drug-protein interactions.

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Journal:  J Chromatogr B Biomed Sci Appl       Date:  1997-10-10

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Authors:  Michael A Fischbach; Hening Lin; David R Liu; Christopher T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-14       Impact factor: 11.205

6.  Formation of glyoxal, methylglyoxal and 3-deoxyglucosone in the glycation of proteins by glucose.

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7.  Compartmentalized glucose metabolism in Pseudomonas putida is controlled by the PtxS repressor.

Authors:  Abdelali Daddaoua; Tino Krell; Carlos Alfonso; Bertrand Morel; Juan-Luis Ramos
Journal:  J Bacteriol       Date:  2010-06-25       Impact factor: 3.490

Review 8.  Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging.

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Journal:  Biotechniques       Date:  2010-08       Impact factor: 1.993

Review 9.  The acute phase protein alpha1-acid glycoprotein: a model for altered glycosylation during diseases.

Authors:  Fabrizio Ceciliani; Vanessa Pocacqua
Journal:  Curr Protein Pept Sci       Date:  2007-02       Impact factor: 3.272

Review 10.  Biomolecular NMR: a chaperone to drug discovery.

Authors:  Marco Betz; Krishna Saxena; Harald Schwalbe
Journal:  Curr Opin Chem Biol       Date:  2006-05-05       Impact factor: 8.822

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  14 in total

Review 1.  Analysis of solute-protein interactions and solute-solute competition by zonal elution affinity chromatography.

Authors:  Pingyang Tao; Saumen Poddar; Zuchen Sun; David S Hage; Jianzhong Chen
Journal:  Methods       Date:  2018-02-02       Impact factor: 3.608

2.  Analysis of multi-site drug-protein interactions by high-performance affinity chromatography: Binding by glimepiride to normal or glycated human serum albumin.

Authors:  Ryan Matsuda; Zhao Li; Xiwei Zheng; David S Hage
Journal:  J Chromatogr A       Date:  2015-07-06       Impact factor: 4.759

Review 3.  Analysis of stereoselective drug interactions with serum proteins by high-performance affinity chromatography: A historical perspective.

Authors:  Zhao Li; David S Hage
Journal:  J Pharm Biomed Anal       Date:  2017-01-11       Impact factor: 3.935

4.  Analysis of free drug fractions in human serum by ultrafast affinity extraction and two-dimensional affinity chromatography.

Authors:  Xiwei Zheng; Maria Podariu; Ryan Matsuda; David S Hage
Journal:  Anal Bioanal Chem       Date:  2015-10-13       Impact factor: 4.142

Review 5.  [Application of metabolomics in neonatal clinical practice].

Authors:  Qiu-Tong Liu; Xiao-Yun Zhong
Journal:  Zhongguo Dang Dai Er Ke Za Zhi       Date:  2019-09

Review 6.  Kinetic analysis of drug-protein interactions by affinity chromatography.

Authors:  Cong Bi; Sandya Beeram; Zhao Li; Xiwei Zheng; David S Hage
Journal:  Drug Discov Today Technol       Date:  2015-10-08

7.  NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism.

Authors:  Anush Chiappino-Pepe; Kiandokht Haddadi; Homa MohammadiPeyhani; Jasmin Hafner; Noushin Hadadi; Vassily Hatzimanikatis
Journal:  Elife       Date:  2021-08-03       Impact factor: 8.140

8.  Analysis of free drug fractions in serum by ultrafast affinity extraction and two-dimensional affinity chromatography using α1-acid glycoprotein microcolumns.

Authors:  Cong Bi; Xiwei Zheng; David S Hage
Journal:  J Chromatogr A       Date:  2016-01-04       Impact factor: 4.759

9.  Studies of drug interactions with alpha1-acid glycoprotein by using on-line immunoextraction and high-performance affinity chromatography.

Authors:  Cong Bi; Ryan Matsuda; Chenhua Zhang; Zitha Isingizwe; William Clarke; David S Hage
Journal:  J Chromatogr A       Date:  2017-08-31       Impact factor: 4.759

Review 10.  Protein-DNA/RNA Interactions: An Overview of Investigation Methods in the -Omics Era.

Authors:  Flora Cozzolino; Ilaria Iacobucci; Vittoria Monaco; Maria Monti
Journal:  J Proteome Res       Date:  2021-05-07       Impact factor: 4.466

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