Literature DB >> 15165891

Viroids: the minimal non-coding RNAs with autonomous replication.

Ricardo Flores1, Sonia Delgado, María-Eugenia Gas, Alberto Carbonell, Diego Molina, Selma Gago, Marcos De la Peña.   

Abstract

Viroids are small (246-401 nucleotides), non-coding, circular RNAs able to replicate autonomously in certain plants. Viroids are classified into the families Pospiviroidae and Avsunviroidae, whose members replicate in the nucleus and chloroplast, respectively. Replication occurs by an RNA-based rolling-circle mechanism in three steps: (1). synthesis of longer-than-unit strands catalyzed by host DNA-dependent RNA polymerases forced to transcribe RNA templates, (2). processing to unit-length, which in family Avsunviroidae is mediated by hammerhead ribozymes, and (3). circularization either through an RNA ligase or autocatalytically. Disease induction might result from the accumulation of viroid-specific small interfering RNAs that, via RNA silencing, could interfere with normal developmental pathways.

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Substances:

Year:  2004        PMID: 15165891     DOI: 10.1016/j.febslet.2004.03.118

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  31 in total

Review 1.  The ubiquitous hammerhead ribozyme.

Authors:  Christian Hammann; Andrej Luptak; Jonathan Perreault; Marcos de la Peña
Journal:  RNA       Date:  2012-03-27       Impact factor: 4.942

2.  Ubiquitous presence of the hammerhead ribozyme motif along the tree of life.

Authors:  Marcos de la Peña; Inmaculada García-Robles
Journal:  RNA       Date:  2010-08-12       Impact factor: 4.942

3.  Evolution of hepatitis delta virus RNA genome following long-term replication in cell culture.

Authors:  Jinhong Chang; Severin O Gudima; John M Taylor
Journal:  J Virol       Date:  2005-11       Impact factor: 5.103

4.  Looking for the primordial genetic honeycomb.

Authors:  Enzo Gallori; Elisa Biondi; Sergio Branciamore
Journal:  Orig Life Evol Biosph       Date:  2006-12       Impact factor: 1.950

5.  A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

Authors:  Asuka Itaya; Xuehua Zhong; Ralf Bundschuh; Yijun Qi; Ying Wang; Ryuta Takeda; Ann R Harris; Carlos Molina; Richard S Nelson; Biao Ding
Journal:  J Virol       Date:  2007-01-03       Impact factor: 5.103

6.  The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers.

Authors:  Carlos Briones; Michael Stich; Susanna C Manrubia
Journal:  RNA       Date:  2009-03-24       Impact factor: 4.942

Review 7.  RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence.

Authors:  Nathan Pumplin; Olivier Voinnet
Journal:  Nat Rev Microbiol       Date:  2013-11       Impact factor: 60.633

Review 8.  Sex in a test tube: testing the benefits of in vitro recombination.

Authors:  Diego Pesce; Niles Lehman; J Arjan G M de Visser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-19       Impact factor: 6.237

9.  Development of a novel system to study hepatitis delta virus genome replication.

Authors:  Jinhong Chang; Severin O Gudima; Chi Tarn; Xingcao Nie; John M Taylor
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

10.  Sequence comparisons of global chrysanthemum stunt viroid variants: multiple polymorphic positions scattered through the viroid genome.

Authors:  Ju-Yeon Yoon; Peter Palukaitis
Journal:  Virus Genes       Date:  2012-09-09       Impact factor: 2.332

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