Literature DB >> 15157886

Strategies for gene disruptions and plasmid constructions in fission yeast.

Lili Wang1, Richard Kao, F Douglas Ivey, Charles S Hoffman.   

Abstract

Molecular genetic analyses in Schizosaccharomyces pombe are greatly enhanced by our ability to delete chromosomal genes via homologous recombination and to introduce genes expressed from autonomous plasmids. In this paper, we describe a novel approach to generating marked deletion cassettes that bypasses the need for the long, PAGE-purified oligonucleotides required in the currently used PCR-based deletion approach. We also describe additional uses of this two-step PCR method for constructing chromosomal insertion cassettes. Finally, we describe how gap repair in S. pombe can facilitate plasmid constructions in a manner that circumvents the reliance on compatible restriction sites in the DNA molecules that are being joined. Several applications of this gap repair plasmid construction strategy are discussed.

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Year:  2004        PMID: 15157886      PMCID: PMC4419145          DOI: 10.1016/j.ymeth.2003.11.014

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  21 in total

1.  Gap repair transformation in fission yeast to exchange plasmid-selectable markers.

Authors:  David A Kelly; Charles S Hoffman
Journal:  Biotechniques       Date:  2002-11       Impact factor: 1.993

2.  Recombination-mediated PCR-directed plasmid construction in vivo in yeast.

Authors:  K R Oldenburg; K T Vo; S Michaelis; C Paddon
Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

3.  Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.

Authors:  R K Saiki; S Scharf; F Faloona; K B Mullis; G T Horn; H A Erlich; N Arnheim
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

4.  A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli.

Authors:  C S Hoffman; F Winston
Journal:  Gene       Date:  1987       Impact factor: 3.688

5.  Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.

Authors:  D D Shoemaker; D A Lashkari; D Morris; M Mittmann; R W Davis
Journal:  Nat Genet       Date:  1996-12       Impact factor: 38.330

6.  Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.

Authors:  J Bähler; J Q Wu; M S Longtine; N G Shah; A McKenzie; A B Steever; A Wach; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

7.  Genetic engineering of Schizosaccharomyces pombe: a system for gene disruption and replacement using the ura4 gene as a selectable marker.

Authors:  C Grimm; J Kohli; J Murray; K Maundrell
Journal:  Mol Gen Genet       Date:  1988-12

8.  Characterization of a fission yeast gene, gpa2, that encodes a G alpha subunit involved in the monitoring of nutrition.

Authors:  T Isshiki; N Mochizuki; T Maeda; M Yamamoto
Journal:  Genes Dev       Date:  1992-12       Impact factor: 11.361

9.  TATA box mutations in the Schizosaccharomyces pombe nmt1 promoter affect transcription efficiency but not the transcription start point or thiamine repressibility.

Authors:  G Basi; E Schmid; K Maundrell
Journal:  Gene       Date:  1993-01-15       Impact factor: 3.688

10.  The S.pombe mei2 gene encoding a crucial molecule for commitment to meiosis is under the regulation of cAMP.

Authors:  Y Watanabe; Y Lino; K Furuhata; C Shimoda; M Yamamoto
Journal:  EMBO J       Date:  1988-03       Impact factor: 11.598

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  10 in total

1.  Use of a ura5+-lys7+ cassette to construct unmarked gene knock-ins in Schizosaccharomyces pombe.

Authors:  Dayna K Mudge; Catherine A Hoffman; Tristan J Lubinski; Charles S Hoffman
Journal:  Curr Genet       Date:  2011-12-25       Impact factor: 3.886

2.  The p21-activated protein kinase inhibitor Skb15 and its budding yeast homologue are 60S ribosome assembly factors.

Authors:  Cosmin Saveanu; Jean-Claude Rousselle; Pascal Lenormand; Abdelkader Namane; Alain Jacquier; Micheline Fromont-Racine
Journal:  Mol Cell Biol       Date:  2007-02-16       Impact factor: 4.272

3.  Activated alleles of the Schizosaccharomyces pombe gpa2+ Galpha gene identify residues involved in GDP-GTP exchange.

Authors:  F Douglas Ivey; Francis X Taglia; Fan Yang; Matthew M Lander; David A Kelly; Charles S Hoffman
Journal:  Eukaryot Cell       Date:  2010-02-05

4.  Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins.

Authors:  Huaiyu Sun; Joel D Leverson; Tony Hunter
Journal:  EMBO J       Date:  2007-08-30       Impact factor: 11.598

5.  Plasmid construction using recombination activity in the fission yeast Schizosaccharomyces pombe.

Authors:  Ayako Chino; Kenji Watanabe; Hisao Moriya
Journal:  PLoS One       Date:  2010-03-11       Impact factor: 3.240

6.  A new Schizosaccharomyces pombe chronological lifespan assay reveals that caloric restriction promotes efficient cell cycle exit and extends longevity.

Authors:  Bo-Ruei Chen; Kurt W Runge
Journal:  Exp Gerontol       Date:  2009-05-04       Impact factor: 4.032

7.  Schizosaccharomyces pombe Git1 is a C2-domain protein required for glucose activation of adenylate cyclase.

Authors:  Richard S Kao; Eric Morreale; Lili Wang; F Douglas Ivey; Charles S Hoffman
Journal:  Genetics       Date:  2006-02-19       Impact factor: 4.562

8.  Cloning the Schizosaccharomyces pombe lys2+ gene and construction of new molecular genetic tools.

Authors:  Richard L Hoffman; Charles S Hoffman
Journal:  Curr Genet       Date:  2006-02-21       Impact factor: 3.886

9.  A Tool for Multiple Targeted Genome Deletions that Is Precise, Scar-Free, and Suitable for Automation.

Authors:  Wayne Aubrey; Michael C Riley; Michael Young; Ross D King; Stephen G Oliver; Amanda Clare
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

10.  Cloning and functional complementation of ten Schistosoma mansoni phosphodiesterases expressed in the mammalian host stages.

Authors:  Jane C Munday; Stefan Kunz; Titilola D Kalejaiye; Marco Siderius; Susanne Schroeder; Daniel Paape; Ali H Alghamdi; Zainab Abbasi; Sheng Xiang Huang; Anne-Marie Donachie; Samia William; Abdel Nasser Sabra; Geert Jan Sterk; Sanaa S Botros; David G Brown; Charles S Hoffman; Rob Leurs; Harry P de Koning
Journal:  PLoS Negl Trop Dis       Date:  2020-07-30
  10 in total

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