Literature DB >> 15155546

Universal RNA reference materials for gene expression.

Maureen Cronin1, Krishna Ghosh, Frank Sistare, John Quackenbush, Vincent Vilker, Catherine O'Connell.   

Abstract

A workshop entitled "Metrology and Standards Needs for Gene Expression Technologies: Universal RNA Standards" was held in March 2003 to define the requirements for standardizing RNA-based molecular assays, specifically microarray and quantitative reverse-transcriptase-PCR technologies. NIST sponsored the workshop, and participants represented government, industry, academia, and clinic. Workshop participants concluded that as a first step, two RNA reference materials could be defined that would help in standardization of gene-expression technologies: an Assay Process Reference Material, and a Universal Array Hybridization Reference Material. The specific characteristics of these two standardized materials were broadly outlined. The Assay Process Material was proposed to be a pool of 96 expressed human sequences of defined composition, cloned in a defined vector and pooled in prescribed ways. The Universal Array Hybridization Material was defined as a pool of 12 "alien" synthetic sequences not expressed in any known genome to be used to control for variability in array hybridization methods. Work is underway at NIST and among members of the gene expression array community to further define these materials and make them available.

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Year:  2004        PMID: 15155546     DOI: 10.1373/clinchem.2004.035675

Source DB:  PubMed          Journal:  Clin Chem        ISSN: 0009-9147            Impact factor:   8.327


  25 in total

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2.  Defining stable reference genes in HIV latency reversal experiments.

Authors:  Cristina Ceriani; Gabrielle S Streeter; Kena J Lemu; Katherine S James; Simon Ghofrani; Brigitte Allard; Bonnie E Shook-Sa; David M Margolis; Nancie M Archin
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Review 3.  Reference standards for next-generation sequencing.

Authors:  Simon A Hardwick; Ira W Deveson; Tim R Mercer
Journal:  Nat Rev Genet       Date:  2017-06-19       Impact factor: 53.242

4.  21-Gene Recurrence Score for prognosis and prediction of taxane benefit after adjuvant chemotherapy plus endocrine therapy: results from NSABP B-28/NRG Oncology.

Authors:  Eleftherios P Mamounas; Gong Tang; Soonmyung Paik; Frederick L Baehner; Qing Liu; Jong-Hyeon Jeong; S Rim Kim; Steven M Butler; Farid Jamshidian; Diana B Cherbavaz; Amy P Sing; Steven Shak; Thomas B Julian; Barry C Lembersky; D Lawrence Wickerham; Joseph P Costantino; Norman Wolmark
Journal:  Breast Cancer Res Treat       Date:  2017-11-11       Impact factor: 4.872

5.  21-Gene Recurrence Score and Locoregional Recurrence in Node-Positive/ER-Positive Breast Cancer Treated With Chemo-Endocrine Therapy.

Authors:  Eleftherios P Mamounas; Qing Liu; Soonmyung Paik; Frederick L Baehner; Gong Tang; Jong-Hyeon Jeong; S Rim Kim; Steven M Butler; Farid Jamshidian; Diana B Cherbavaz; Amy P Sing; Steven Shak; Thomas B Julian; Barry C Lembersky; D Lawrence Wickerham; Joseph P Costantino; Norman Wolmark
Journal:  J Natl Cancer Inst       Date:  2017-01-25       Impact factor: 13.506

6.  RT-qPCR for Detection and Expression Monitoring of Core Genes Involved in the RNA Interference Pathways of Western Corn Rootworm (Diabrotica virgifera virgifera).

Authors:  Courtney A Davis-Vogel
Journal:  Methods Mol Biol       Date:  2022

Review 7.  Alzheimer's disease biomarker discovery in symptomatic and asymptomatic patients: experimental approaches and future clinical applications.

Authors:  Lap Ho; Hayley Fivecoat; Jun Wang; Giulio Maria Pasinetti
Journal:  Exp Gerontol       Date:  2009-09-29       Impact factor: 4.032

8.  Universal Reference RNA is not a representative normal sample for oligonucleotide microarray studies.

Authors:  Wilfrido D Mojica; Leighton Stein; Lesleyann Hawthorn
Journal:  Pathol Oncol Res       Date:  2008-06-14       Impact factor: 3.201

9.  Guidelines for the Optimization and Validation of In Situ Hybridization.

Authors:  Julia Jones; William J Howat
Journal:  Methods Mol Biol       Date:  2020

10.  Quality control in microarray assessment of gene expression in human airway epithelium.

Authors:  Tina Raman; Timothy P O'Connor; Neil R Hackett; Wei Wang; Ben-Gary Harvey; Marc A Attiyeh; David T Dang; Matthew Teater; Ronald G Crystal
Journal:  BMC Genomics       Date:  2009-10-24       Impact factor: 3.969

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