Literature DB >> 32394372

Guidelines for the Optimization and Validation of In Situ Hybridization.

Julia Jones1, William J Howat2.   

Abstract

As RNA in situ hybridization (ISH) moves into the mainstream lab and increasingly into clinical adoption and additional multiplexing techniques are developed to enable further RNA ISH identification, a set of guidelines on the validation of ISH is required. These guidelines include choice of methods, appropriate controls, and protocol optimization as well as a central core message of understanding the target, understanding the ISH technique, and using the most appropriate controlling mechanisms to enable reproducible and trustworthy data to be obtained.

Entities:  

Keywords:  Controls; In situ hybridization; Probes; Reproducibility; Validation

Mesh:

Substances:

Year:  2020        PMID: 32394372     DOI: 10.1007/978-1-0716-0623-0_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  32 in total

1.  Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleic acid probes and tyramide signal amplification.

Authors:  Asli N Silahtaroglu; Dorrit Nolting; Lars Dyrskjøt; Eugene Berezikov; Morten Møller; Niels Tommerup; Sakari Kauppinen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 2.  In-situ hybridization of radioactive riboprobes to RNA in tissue sections.

Authors:  Radma Mahmood; Ivor Mason
Journal:  Methods Mol Biol       Date:  2008

3.  If I only had a brain: exploring mouse brain images in the Allen Brain Atlas.

Authors:  Harry Hochheiser; Judith Yanowitz
Journal:  Biol Cell       Date:  2007-07       Impact factor: 4.458

4.  In situ hybridization demonstration of poly-adenylated RNA sequences in formalin-fixed paraffin sections using a biotinylated oligonucleotide poly d(T) probe.

Authors:  J H Pringle; L Primrose; C N Kind; I C Talbot; I Lauder
Journal:  J Pathol       Date:  1989-08       Impact factor: 7.996

5.  Formation and detection of RNA-DNA hybrid molecules in cytological preparations.

Authors:  J G Gall; M L Pardue
Journal:  Proc Natl Acad Sci U S A       Date:  1969-06       Impact factor: 11.205

6.  Whole-Mount and Section In Situ Hybridization in Mouse Embryos for Detecting mRNA Expression and Localization.

Authors:  Kazuko Koshiba-Takeuchi
Journal:  Methods Mol Biol       Date:  2018

7.  The Allen Human Brain Atlas: comprehensive gene expression mapping of the human brain.

Authors:  Elaine H Shen; Caroline C Overly; Allan R Jones
Journal:  Trends Neurosci       Date:  2012-10-05       Impact factor: 13.837

8.  MicroRNA in situ hybridization in tissue microarrays.

Authors:  Julia J Turnock-Jones; John P C Le Quesne
Journal:  Methods Mol Biol       Date:  2014

9.  EMAGE: Electronic Mouse Atlas of Gene Expression.

Authors:  Lorna Richardson; Peter Stevenson; Shanmugasundaram Venkataraman; Yiya Yang; Nick Burton; Jianguo Rao; Jeffrey H Christiansen; Richard A Baldock; Duncan R Davidson
Journal:  Methods Mol Biol       Date:  2014

10.  Whole Mount in situ Localization of miRNAs and mRNAs During Somatic Embryogenesis in Arabidopsis.

Authors:  Anna M Wójcik; Magdalena Mosiolek; Jagna Karcz; Michael D Nodine; Małgorzata D Gaj
Journal:  Front Plant Sci       Date:  2018-09-04       Impact factor: 5.753

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  1 in total

1.  Optimization of Whole Mount RNA Multiplexed in situ Hybridization Chain Reaction With Immunohistochemistry, Clearing and Imaging to Visualize Octopus Embryonic Neurogenesis.

Authors:  Ali M Elagoz; Ruth Styfhals; Sofia Maccuro; Luca Masin; Lieve Moons; Eve Seuntjens
Journal:  Front Physiol       Date:  2022-05-30       Impact factor: 4.755

  1 in total

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