Literature DB >> 15153308

Analysis for free: comparing programs for sequence analysis.

Helge-Friedrich Tippmann1.   

Abstract

Programs to import, manage and align sequences and to analyse the properties of DNA, RNA and proteins are essential for every biological laboratory. This review describes two different freeware (BioEdit and pDRAW for MS Windows) and a commercial program (Sequencher for MS Windows and Apple MacOS). Bioedit and Sequencher offer functions such as sequence alignment and editing plus reading of sequence trace files. pDRAW is a very comfortable visualisation tool with a variety of analysis functions. While Sequencher impresses with a very user-friendly interface and easy-to-use tools, BioEdit offers the largest and most customisable variety of tools. The strength of pDRAW is drawing and analysis of single sequences for priming and restriction sites and virtual cloning. It has a database function for user-specific oligonucleotides and restriction enzymes.

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Year:  2004        PMID： 15153308     DOI： 10.1093/bib/5.1.82

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN： 1467-5463            Impact factor:   11.622


  59 in total

1.  Design and implementation of a library-based information service in molecular biology and genetics at the University of Pittsburgh.

Authors:  Ansuman Chattopadhyay; Nancy Hrinya Tannery; Deborah A L Silverman; Phillip Bergen; Barbara A Epstein
Journal:  J Med Libr Assoc       Date:  2006-07

2.  Genetic characteristics of Neisseria meningitidis serogroup B strains carried by adolescents living in Milan, Italy: implications for vaccine efficacy.

Authors:  Susanna Esposito; Alberto Zampiero; Leonardo Terranova; Valentina Montinaro; Alessia Scala; Valentina Ansuini; Nicola Principi
Journal:  Hum Vaccin Immunother       Date:  2013-07-23       Impact factor: 3.452

3.  Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.

Authors:  Dan Shen; Bo Gao; Csaba Miskey; Cai Chen; Yatong Sang; Wencheng Zong; Saisai Wang; Yali Wang; Xiaoyan Wang; Zoltán Ivics; Chengyi Song
Journal:  Genome Biol Evol       Date:  2020-07-01       Impact factor: 3.416

4.  Effect of natural polymorphisms in the HIV-1 CRF02_AG protease on protease inhibitor hypersusceptibility.

Authors:  André F A Santos; Denis M Tebit; Matthew S Lalonde; Ana B Abecasis; Annette Ratcliff; Ricardo J Camacho; Ricardo S Diaz; Ottmar Herchenröder; Marcelo A Soares; Eric J Arts
Journal:  Antimicrob Agents Chemother       Date:  2012-02-13       Impact factor: 5.191

5.  A panel of 16 full-length HCV genomes was characterized in China belonging to genotypes 1-6 including subtype 2f and two novel genotype 6 variants.

Authors:  Ru Xu; Wangxia Tong; Lin Gu; Chunhua Li; Yongshui Fu; Ling Lu
Journal:  Infect Genet Evol       Date:  2013-09-05       Impact factor: 3.342

6.  European wild boars and domestic pigs display different polymorphic patterns in the Toll-like receptor (TLR) 1, TLR2, and TLR6 genes.

Authors:  Ingrid-Maria Bergman; Johan K Rosengren; Kjell Edman; Inger Edfors
Journal:  Immunogenetics       Date:  2009-12-02       Impact factor: 2.846

7.  The WTX/AMER1 gene family: evolution, signature and function.

Authors:  Agnès Boutet; Glenda Comai; Andreas Schedl
Journal:  BMC Evol Biol       Date:  2010-09-15       Impact factor: 3.260

8.  Isolation and characterization of the Agvip1 gene and response to abiotic and metal ions stresses in three celery cultivars.

Authors:  Yan Li; Yi-Yun Chen; Feng Wang; Zhi-Sheng Xu; Qian Jiang; Ai-Sheng Xiong
Journal:  Mol Biol Rep       Date:  2014-06-27       Impact factor: 2.316

9.  Simultaneous genotyping of all hemagglutinin and neuraminidase subtypes of avian influenza viruses by use of padlock probes.

Authors:  Péter Gyarmati; Tim Conze; Siamak Zohari; Neil LeBlanc; Mats Nilsson; Ulf Landegren; Johan Banér; Sándor Belák
Journal:  J Clin Microbiol       Date:  2008-03-19       Impact factor: 5.948

10.  Epidemiology and transmission characteristics of human adenovirus type 7 caused acute respiratory disease outbreak in military trainees in East China.

Authors:  Jun Cheng; Xiaoping Qi; Dawei Chen; Xujian Xu; Guozheng Wang; Yuzhu Dai; Dawei Cui; Qingyong Chen; Ping Fan; Liuda Ni; Miao Liu; Feiyan Zhu; Mei Yang; Changjun Wang; Yuexi Li; Changgui Sun; Zhongyong Wang
Journal:  Am J Transl Res       Date:  2016-05-15       Impact factor: 4.060
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