Literature DB >> 15136912

Organization of the mitochondrial genome of Antarctic krill Euphausia superba (Crustacea: Malacostraca).

Ryuji J Machida1, Masaki U Miya, Mitsugu M Yamauchi, Mutsumi Nishida, Shuhei Nishida.   

Abstract

We determined the nearly complete DNA sequence of the mitochondrial genome of Antarctic krill Euphausia superba (Crustacea: Malacostraca), one of the most ecologically and commercially important zooplankters in Antarctic waters. All of the genome sequences were purified by gene amplification using long polymerase chain reaction (PCR), and the products were subsequently used as templates for either direct sequencing using a primer-walking strategy or nested PCR with crustacea-versatile primers. Although we were unable to determine a portion of the genome owing to technical difficulties, the sequenced position, 14,606 bp long, contained all of the 13 protein-coding genes, 19 of the 22 transfer RNA genes, and the large subunit as well as a portion of the small subunit ribosomal RNA genes. Gene rearrangement was observed for 3 transfer RNA genes (tRNACys, tRNATyr, and tRNATrp) and the 2 leucine tRNA genes.

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Year:  2004        PMID: 15136912     DOI: 10.1007/s10126-003-0016-6

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  48 in total

1.  Complete sequence of the mitochondrial DNA of the primitive opisthobranch gastropod Pupa strigosa: systematic implication of the genome organization.

Authors:  A Kurabayashi; R Ueshima
Journal:  Mol Biol Evol       Date:  2000-02       Impact factor: 16.240

2.  Arthropod phylogeny based on eight molecular loci and morphology.

Authors:  G Giribet; G D Edgecombe; W C Wheeler
Journal:  Nature       Date:  2001-09-13       Impact factor: 49.962

3.  Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics.

Authors:  Y Kumazawa; M Nishida
Journal:  J Mol Evol       Date:  1993-10       Impact factor: 2.395

4.  The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions.

Authors:  Y Kumazawa; H Ota; M Nishida; T Ozawa
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

5.  Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement.

Authors:  J R Macey; J A Schulte; A Larson; T J Papenfuss
Journal:  Mol Biol Evol       Date:  1998-01       Impact factor: 16.240

6.  Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura).

Authors:  M J Hickerson; C W Cunningham
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

7.  In vivo and in vitro evidence for slipped mispairing in mammalian mitochondria.

Authors:  C S Madsen; S C Ghivizzani; W W Hauswirth
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

8.  The mitochondrial genome of the brachiopod Laqueus rubellus.

Authors:  Y Noguchi; K Endo; F Tajima; R Ueshima
Journal:  Genetics       Date:  2000-05       Impact factor: 4.562

9.  Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes.

Authors:  P Cantatore; M N Gadaleta; M Roberti; C Saccone; A C Wilson
Journal:  Nature       Date:  1987 Oct 29-Nov 4       Impact factor: 49.962

10.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10
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  12 in total

1.  Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution.

Authors:  Shi Wang; Zhenmin Bao; Ning Li; Lingling Zhang; Jingjie Hu
Journal:  Mar Biotechnol (NY)       Date:  2007-02-08       Impact factor: 3.619

2.  Mitochondrial DNA sequence and gene organization in the [corrected] Australian blacklip [corrected] abalone Haliotis rubra (leach).

Authors:  Ben T Maynard; Lyndal J Kerr; Joanne M McKiernan; Eliza S Jansen; Peter J Hanna
Journal:  Mar Biotechnol (NY)       Date:  2005-09-28       Impact factor: 3.619

3.  The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschii sequenced using 454 next-generation sequencing, with a phylogenetic analysis of their position in the Malacostracan family tree.

Authors:  Mattias L Johansson; Angela L Sremba; Leah R Feinberg; Michael A Banks; William T Peterson
Journal:  Mol Biol Rep       Date:  2012-06-26       Impact factor: 2.316

4.  Assessing population-level variation in the mitochondrial genome of Euphausia superba using 454 next-generation sequencing.

Authors:  Mattias Johansson; Elizabeth Duda; Angela Sremba; Michael Banks; William Peterson
Journal:  Mol Biol Rep       Date:  2012-01-05       Impact factor: 2.316

5.  Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae).

Authors:  Adam D Miller; Nicholas P Murphy; Christopher P Burridge; Christopher M Austin
Journal:  Mar Biotechnol (NY)       Date:  2005 Jul-Aug       Impact factor: 3.619

6.  The mitochondrial genome of Euphausia superba (Prydz Bay) (Crustacea: Malacostraca: Euphausiacea) reveals a novel gene arrangement and potential molecular markers.

Authors:  Xin Shen; Haiqing Wang; Jianfeng Ren; Mei Tian; Minxiao Wang
Journal:  Mol Biol Rep       Date:  2009-07-04       Impact factor: 2.316

7.  The mitochondrial genome of the venomous cone snail Conus consors.

Authors:  Age Brauer; Alexander Kurz; Tim Stockwell; Holly Baden-Tillson; Juliana Heidler; Ilka Wittig; Silke Kauferstein; Dietrich Mebs; Reto Stöcklin; Maido Remm
Journal:  PLoS One       Date:  2012-12-07       Impact factor: 3.240

8.  Organization of the mitochondrial genome of mantis shrimp Pseudosquilla ciliata (Crustacea: Stomatopoda).

Authors:  Lars Podsiadlowski; Thomas Bartolomaeus
Journal:  Mar Biotechnol (NY)       Date:  2005-08-12       Impact factor: 3.727

9.  Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome.

Authors:  Melody S Clark; Michael A S Thorne; Jean-Yves Toullec; Yan Meng; Le Luo Guan; Lloyd S Peck; Stephen Moore
Journal:  PLoS One       Date:  2011-01-06       Impact factor: 3.240

10.  Systematic sequencing of mRNA from the Antarctic krill (Euphausia superba) and first tissue specific transcriptional signature.

Authors:  Cristiano De Pittà; Cristiano Bertolucci; Gabriella M Mazzotta; Filippo Bernante; Giorgia Rizzo; Barbara De Nardi; Alberto Pallavicini; Gerolamo Lanfranchi; Rodolfo Costa
Journal:  BMC Genomics       Date:  2008-01-28       Impact factor: 3.969

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