Literature DB >> 15902543

Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae).

Adam D Miller1, Nicholas P Murphy, Christopher P Burridge, Christopher M Austin.   

Abstract

The complete mitochondrial DNA sequence was determined for the Australian giant crab Pseudocarcinns gigas (Crustacea: Decapoda: Menippidae) and the giant freshwater shrimp Macrobrachium rosenbergii (Crustacea: Decapoda: Palaemonidae). The Pse gigas and Mrosenbergii mitochondrial genomes are circular molecules, 15,515 and 15,772 bp in length, respectively, and have the same gene composition as found in other metazoans. The gene arrangement of M. rosenbergii corresponds with that of the presumed ancestral arthropod gene order, represented by Limulus polyphemus, except for the position of the tRNALeu(UUR) gene. The Pse. gigas gene arrangement corresponds exactly with that reported for another brachyuran, Portunus trituberculatus, and differs from the M. rosenbergii gene order by only the position of the tRNAHis gene. Given the relative positions of intergenic nonoding nucleotides, the "duplication/random loss" model appears to be the most plausible mechanism for the translocation of this gene. These data represent the first caridean and only the second brachyuran complete mtDNA sequences, and a source of information that will facilitate surveys of intraspecific variation within these commercially important decapod species.

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Year:  2005        PMID: 15902543     DOI: 10.1007/s10126-004-4077-8

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  36 in total

1.  Complete mitochondrial DNA sequence of a tadpole shrimp (Triops cancriformis) and analysis of museum samples.

Authors:  Kazuo Umetsu; Naruki Iwabuchi; Isao Yuasa; Naruya Saitou; Paul F Clark; Geoff Boxshall; Motoki Osawa; Keiji Igarashi
Journal:  Electrophoresis       Date:  2002-12       Impact factor: 3.535

2.  Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement.

Authors:  J R Macey; J A Schulte; A Larson; T J Papenfuss
Journal:  Mol Biol Evol       Date:  1998-01       Impact factor: 16.240

3.  Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome.

Authors:  J R Macey; A Larson; N B Ananjeva; Z Fang; T J Papenfuss
Journal:  Mol Biol Evol       Date:  1997-01       Impact factor: 16.240

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura).

Authors:  M J Hickerson; C W Cunningham
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

6.  Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure.

Authors:  K Tamura; T Aotsuka
Journal:  Biochem Genet       Date:  1988-12       Impact factor: 1.890

7.  Complete mitochondrial DNA sequence of the important honey bee pest, Varroa destructor (Acari: Varroidae).

Authors:  Jay D Evans; Dawn L Lopez
Journal:  Exp Appl Acarol       Date:  2002       Impact factor: 2.132

8.  The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes.

Authors:  Renfu Shao; Stephen C Barker
Journal:  Mol Biol Evol       Date:  2003-03       Impact factor: 16.240

9.  Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed.

Authors:  Adam D Miller; Thuy T T Nguyen; Christopher P Burridge; Christopher M Austin
Journal:  Gene       Date:  2004-04-28       Impact factor: 3.688

10.  Complete mitochondrial DNA sequence of the sea-firefly, Vargula hilgendorfii (Crustacea, Ostracoda) with duplicate control regions.

Authors:  Katsunori Ogoh; Yoshihiro Ohmiya
Journal:  Gene       Date:  2004-02-18       Impact factor: 3.688

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  28 in total

1.  A male reproduction-related Kazal-type peptidase inhibitor gene in the prawn, Macrobrachium rosenbergii: molecular characterization and expression patterns.

Authors:  Jun-Xia Cao; Jie-Qiong Dai; Zhong-Min Dai; Guo-Li Yin; Wei-Jun Yang
Journal:  Mar Biotechnol (NY)       Date:  2006-09-15       Impact factor: 3.619

2.  A PL10 vasa-like gene in the kuruma shrimp, Marsupenaeus japonicus, expressed during development and in adult gonad.

Authors:  Melony J Sellars; Russell E Lyons; Peter M Grewe; Tony Vuocolo; Lisa Leeton; Greg J Coman; Bernard M Degnan; Nigel P Preston
Journal:  Mar Biotechnol (NY)       Date:  2007-03-20       Impact factor: 3.619

3.  Nearly complete mitochondrial genome of Polyascus gregaria and the phylogenetic relationships among maxillopodans.

Authors:  Jie Yan; Jianli Zhou; Peng Li; Hongying Sun; Kaiya Zhou
Journal:  Mol Biol Rep       Date:  2012-02-05       Impact factor: 2.316

4.  Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution.

Authors:  Shi Wang; Zhenmin Bao; Ning Li; Lingling Zhang; Jingjie Hu
Journal:  Mar Biotechnol (NY)       Date:  2007-02-08       Impact factor: 3.619

5.  An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods.

Authors:  L Aznar-Cormano; J Brisset; T-Y Chan; L Corbari; N Puillandre; J Utge; M Zbinden; D Zuccon; S Samadi
Journal:  Genetica       Date:  2015-02-14       Impact factor: 1.082

Review 6.  Current status of genetics and genomics of reared penaeid shrimp: information relevant to access and benefit sharing.

Authors:  Farafidy Andriantahina; Xiaolin Liu; Tingting Feng; Jianhai Xiang
Journal:  Mar Biotechnol (NY)       Date:  2013-03-27       Impact factor: 3.619

7.  The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschii sequenced using 454 next-generation sequencing, with a phylogenetic analysis of their position in the Malacostracan family tree.

Authors:  Mattias L Johansson; Angela L Sremba; Leah R Feinberg; Michael A Banks; William T Peterson
Journal:  Mol Biol Rep       Date:  2012-06-26       Impact factor: 2.316

8.  The complete mitochondrial genome of the black mud crab, Scylla serrata (Crustacea: Brachyura: Portunidae) and its phylogenetic position among (pan)crustaceans.

Authors:  Amnuay Jondeung; Wirangrong Karinthanyakit; Jitlada Kaewkhumsan
Journal:  Mol Biol Rep       Date:  2012-10-11       Impact factor: 2.316

9.  Complete mitochondrial genome of the Asian paddle crab Charybdis japonica (Crustacea: Decapoda: Portunidae): gene rearrangement of the marine brachyurans and phylogenetic considerations of the decapods.

Authors:  Yuan Liu; Zhaoxia Cui
Journal:  Mol Biol Rep       Date:  2009-08-28       Impact factor: 2.316

10.  Improved tRNA prediction in the American house dust mite reveals widespread occurrence of extremely short minimal tRNAs in acariform mites.

Authors:  Pavel B Klimov; Barry M Oconnor
Journal:  BMC Genomics       Date:  2009-12-11       Impact factor: 3.969

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