Literature DB >> 15126494

-1 frameshifting at a CGA AAG hexanucleotide site is required for transposition of insertion sequence IS1222.

Nina Mejlhede1, Patricia Licznar, Marie-Françoise Prère, Norma M Wills, Raymond F Gesteland, John F Atkins, Olivier Fayet.   

Abstract

The discovery of programmed -1 frameshifting at the hexanucleotide shift site CGA_AAG, in addition to the classical X_XXY_YYZ heptanucleotide shift sequences, prompted a search for instances among eubacterial insertion sequence elements. IS1222 has a CGA_AAG shift site. A genetic analysis revealed that frameshifting at this site is required for transposition.

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Year:  2004        PMID： 15126494      PMCID： PMC400620          DOI： 10.1128/JB.186.10.3274-3277.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

1.  Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

Authors:  A J Herr; C C Nelson; N M Wills; R F Gesteland; J F Atkins
Journal:  J Mol Biol       Date:  2001-06-22       Impact factor: 5.469

Review 2.  Recoding: translational bifurcations in gene expression.

Authors:  Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  Gene       Date:  2002-03-20       Impact factor: 3.688

Review 3.  Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting.

Authors:  I Brierley; S Pennell
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

4.  Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Jiadong Zhou; Andrew W Hammer; Raymond F Gesteland; John F Atkins
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

5.  Programmed translational frameshifting and initiation at an AUU codon in gene expression of bacterial insertion sequence IS911.

Authors:  P Polard; M F Prère; M Chandler; O Fayet
Journal:  J Mol Biol       Date:  1991-12-05       Impact factor: 5.469

6.  Programmed translational -1 frameshifting on hexanucleotide motifs and the wobble properties of tRNAs.

Authors:  Patricia Licznar; Nina Mejlhede; Marie-Françoise Prère; Norma Wills; Raymond F Gesteland; John F Atkins; Olivier Fayet
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

7.  Ribosomal -1 frameshifting during decoding of Bacillus subtilis cdd occurs at the sequence CGA AAG.

Authors:  N Mejlhede; J F Atkins; J Neuhard
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

8.  Genetic variability of the frameshift region in IS911 transposable elements from Escherichia coli clinical isolates.

Authors:  Patricia Licznar; Claire Bertrand; Isabelle Canal; Marie Françoise Prère; Olivier Fayet
Journal:  FEMS Microbiol Lett       Date:  2003-01-28       Impact factor: 2.742

9.  High-level ribosomal frameshifting directs the synthesis of IS150 gene products.

Authors:  K Vögele; E Schwartz; C Welz; E Schiltz; B Rak
Journal:  Nucleic Acids Res       Date:  1991-08-25       Impact factor: 16.971

10.  Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region.

Authors:  T Jacks; H D Madhani; F R Masiarz; H E Varmus
Journal:  Cell       Date:  1988-11-04       Impact factor: 41.582
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  5 in total

1.  A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment.

Authors:  Virag Sharma; Andrew E Firth; Ivan Antonov; Olivier Fayet; John F Atkins; Mark Borodovsky; Pavel V Baranov
Journal:  Mol Biol Evol       Date:  2011-06-14       Impact factor: 16.240

2.  IncH-type plasmid harboring bla CTX-M-15, bla DHA-1, and qnrB4 genes recovered from animal isolates.

Authors:  Andreas Schlüter; Patrice Nordmann; Rémy A Bonnin; Yves Millemann; Felix G Eikmeyer; Daniel Wibberg; Alfred Pühler; Laurent Poirel
Journal:  Antimicrob Agents Chemother       Date:  2014-04-21       Impact factor: 5.191

3.  Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators.

Authors:  Christophe Penno; Virag Sharma; Arthur Coakley; Mary O'Connell Motherway; Douwe van Sinderen; Lucyna Lubkowska; Maria L Kireeva; Mikhail Kashlev; Pavel V Baranov; John F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

Review 4.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

5.  FSDB: a frameshift signal database.

Authors:  Sanghoon Moon; Yanga Byun; Kyungsook Han
Journal:  Comput Biol Chem       Date:  2007-05-17       Impact factor: 2.877
  5 in total

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